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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTAAATTTGGTGCGTCCTGCAGGTTTCACCATCCAAGAAATGGTGGTGGATCCATGAGCCATGTGTCACTAAATATTTACGGATACCCACTAAGACTGgttgggatttggtttattcttcaccttttctaatcaaattcgttttactaaatcagcatggttgtaatttgggaatggacacttccatttagcttatgtttatgaattggaaattttgcaacag

Basic information

species Vitis vinifera
transcript Vv07s0104g01460.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g01460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G47850.1 (Arabidopsis thaliana), 5'ss of exon 4
CTGTAAATTTGGTGCGTCCTGCAGGTTTCACCATCCAAGAAATGGTGGTGGATCCATGAGCCATGTGTCACTAAATATTTACGGATACCCACTAAGACTGgttgggatttggtttattcttcaccttttctaatcaaattcgttttactaaatcagcatggttgtaatttgggaatggacacttccatttagcttatgtttatgaattggaaattttgcaacag
 ||||||||||| ||||| ||||  || ||||||||||  ||||  ||||||||||||||||| ||  |||||||||| || ||||||||  || ||      | | |  | ||| ||      | | || ||| |||  | |  |    | |  ||||| |  |  ||     ||  || |||   | |||                                
TTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAGAATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGA------GAGgtaagctttgtttccactcatgtcaaataaaaggc-tagtctcgagtttgcatgatctt--tt-----ataaactctt---tgtag--------------------------------

upper sequence: Vv07s0104g01460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G47850.2 (Arabidopsis thaliana), 5'ss of exon 4
CTGTAAATTTGGTGCGTCCTGCAGGTTTCACCATCCAAGAAATGGTGGTGGATCCATGAGCCATGTGTCACTAAATATTTACGGATACCCACTAAGACTGgttgggatttggtttattcttcaccttttctaatcaaattc---gttttactaaatcagcatgg-----ttgtaatttgggaatggacacttccatttagcttatgtttatgaattggaaattttgcaacag----------------------
 ||||||||||| ||||| ||||  || ||||||||||  ||||  ||||||||||||||||| ||  |||||||||| || ||||||||  || ||  |||  |  ||   |  | || |  |   |   |  | | |     ||||   | |      ||       |||||   ||  || | |  || | | | |  | |       | | || |||||| | |  |                       
TTGTAAATTTGGGGCGTCATGCAAATTCCACCATCCAAAGAATGCAGGTGGATCCATGAGCCACGTTCCACTAAATATATATGGATACCCTGTACGAGAGgtaagctttgtttccactcatgtcaaataaaaggctagtctcgagtttgcatgatcttttataaactctttgtagggtgataacgaatgctcctact-atttgaaaacggggcaatgcaaatttggtataacctgtaaatttcatcatcctcag