1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTTATGCCAGCATGTCACCTATTGTCCATATTGTTAATATTGGATCTGCTGCAACAGAATCTCTTGCAAACATTACGgtatgaaataaaagttatatatttgaaatttaataaatctagcaagtagtttaatgggggttactggtacacaattggatattcttgctgtcctgctaat...
species | Vitis vinifera |
transcript | Vv07s0104g00900.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATATTGTTAATATTGGATCTGCTGCAACAGAATCTCTTGCAAACATTACG GAGATTCATGATGGTTTGGATTTTTCTGCTGCTGATGATGAGGGTTATTCTEST: gi|110711873|gb|EE088850.1|EE088850
genomic: ATATTGTTAATATTGGATCTGCTGCAACAGAATCTCTTGCAAACATTACGgtatgaaata ... tgttgtgcagGAGATTCATGATGGTTTGGATTTTTCTGCTGCTGATGATGAGGGTTATTCT
EST: ATATTGTTAATATTGGATCTGCTGCAACAGAATCTCTTGCAAACATTACG GAGATTCATGATGGTTTGGATTTTTCTGCTGCTGATGATGAAGGTTATTCT
genomic: ATATTGTTAATATTGGATCTGCTGCAACAGAATCTCTTGCAAACATTACGgtatgaaata ... tgttgtgcagGAGATTCATGATGGTTTGGATTTTTCTGCTGCTGATGATGAGGGTTATTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTATGCCAGCATGTCACCTATTGTCCATATTGTTAATATTGGATCTGCTGCAACAGAATCTCTTGCAAACATTACGgtatgaaataaaagttatatatttgaaatttaataaatctagcaagtagtttaatgggggttactggtacacaattggatattcttgctgtcctgctaat
- - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa