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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTACCTCAGGGCACTTGAGGAGGTAGTCATTCGTGTTCTGTCCACTACATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGCGTTTGGGTTGgtatgcttcctaaccctgttacttatataggcgtgtacatatgtatacatggatatatatttatttatttgtgtacgcacatatatttgtttatttcttt...

Basic information

species Vitis vinifera
transcript Vv07s0104g00810.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g00810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G03720.1 (Glycine max), 5'ss of exon 2
TGGTACCTCAGGGCACTTGAGGAGGTAGTCATTCGTGTTCTGTCCACTACATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGCGTTTGGGTTGgtatgcttcctaaccctgttacttatataggcgtgtacatatgta-tacatggatatatatttatttatttgtgtacgcacatatatttgtttatttcttt-
||||||||| || | ||||||||||| || ||||||| ||| ||  | |||||||| ||| | ||||||||  | || ||||| ||||| ||||||||||||| |  ||  ||   | |||  | | | | | | |||||    | |   |  || |    | |  |||||   |     ||||| ||| || | |  ||| 
TGGTACCTCCGGACCCTTGAGGAGGTCGTTATTCGTGCTCTTTCTTCAACATTTTCAATTCAGGCTTCTCGGGTAGAAGGTTTAACTGGTGTTTGGGTTGgtaagtctc--aattatcttatctttgttgccatctacatcaacaatttgtaaatttggtgtcagatatttagcttgattcatatgtttattgaatagtttg

upper sequence: Vv07s0104g00810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G31050.1 (Arabidopsis thaliana), 5'ss of exon 3
TGGTACCTCAGGGCACTTGAGGAGGTAGTCATTCGTGTTCTGTCCACTACATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGCGTTTGGGTTGgtatgcttcctaaccct----gttacttatataggcgtgtacatatgtatacatggatatatatttatttatttgtgtacg-cacatatatttgtttatttcttt
||||||||||||   ||||| ||| | ||||| ||||| || ||| | || || || |||||||||||||| ||||| ||||| ||||| |||||||||||||||  || ||   |     | |  || | || | |     |||| ||| |   |||  || | | ||| ||||   | |  | |||||               
TGGTACCTCAGGATGCTTGAAGAGATTGTCATCCGTGTGCTTTCCTCAACTTTCTCCATTAAAGCTTCTCGTCTTGACGGTTTAACTGGAGTTTGGGTTGgtatgtctcatatttcaaatggatgattttgtaagtgatctaatatatattccgagattgatttctttttgtttgcaaatggtatatatag--------------

upper sequence: Vv07s0104g00810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G47578.1 (Arabidopsis thaliana), 5'ss of exon 3
TGGTACCTCAGGGCACTTGAGGAGGTAGTCATTCGTGTTCTGTCCACTACATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGCGTTTGGGTTGgtatgct---tcctaaccct-gttacttatataggcgtgtacatatgtatac--atggatatatatttatttatttgtgtacgcacatatatttgtttatttcttt
|||||| | |||   |||||||| ||||| ||||||||||| ||  |  | ||  | || || |||||||| || || ||||||||||| ||||||||||||||| |   || ||| | |   | ||||    ||  ||  |  ||   | |   || |   |||  ||| ||||| | ||                         
TGGTACTTAAGGAAGCTTGAGGAAGTAGTTATTCGTGTTCTTTCTTCGGCTTTCGCCATCAATGCTTCTCGTCTCGACGGTTTTACTGGAGTTTGGGTTGgtatgtttgttcataatcttcacttcttactgtggtttgatctgattcttgctagtgaactaatacatatgtatttatatag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27581478|gb|CB004173.1|CB004173
EST:     ATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGCGTTTGGGTTG                         GGGATCAGAAACTAGCAGCCATTGGGATACGAGTGTCTCAATGGATAGCAT
genomic: ATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGCGTTTGGGTTGgtatgcttcc ... tttacttcagGGGATCAGAAACTAGCAGCCATTGGGATACGAGTGTCTCAATGGATAGCAT
EST: gi|27579765|gb|CB002460.1|CB002460
EST:     ATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGCGTTTGGGTTG                         GGGATCAGAAACTAGCAGCCATTGGGATACGAGTGTCTCAATGGATAGCAT
genomic: ATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGCGTTTGGGTTGgtatgcttcc ... tttacttcagGGGATCAGAAACTAGCAGCCATTGGGATACGAGTGTCTCAATGGATAGCAT
EST: gi|110373706|gb|EC937992.1|EC937992
EST:     ATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGTGTTTGGGTTG                         GGGATCAGAAACTAGCAGCCATTGGGATACGAGTGTCTCAATGGATAGCAT
genomic: ATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGCGTTTGGGTTGgtatgcttcc ... tttacttcagGGGATCAGAAACTAGCAGCCATTGGGATACGAGTGTCTCAATGGATAGCAT