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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCTCCTAGGAAGAAGGCTTTTATGGTTATTGGAATAAATACTGCTTTTAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactatcacttgatatcagctatgagtttctctgacttaaaaatttacaaactcactctttaatgtttgattag

Basic information

species Vitis vinifera
transcript Vv07s0031g03090.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g03090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G22015.1 (Arabidopsis thaliana), 5'ss of exon 4
AGTTCTCCTAGGAAGAAGGCTTTTATGGTTATTGGAATAAATACTGCTTTTAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtat---tactatc---acttgatatcagctatgagtttctctgacttaaaaatttacaaactcact---ctttaatgtttgattag------
 |    |  | ||| || | ||||||||| ||||| || |||||||| ||||| ||| ||||| | || |||||  | |||||||||||||||||| |||||||   |  | ||    ||| | |||     | | ||||  || ||| |     |  || || | |   ||||  | | | ||         
GGAAACCAAAAGAACAAAGTTTTTATGGTGATTGGTATCAATACTGCATTTAGCAGTCGAAAACGTCGCGATTCGCTTAGAGAGACTTGGATGCCTCAAGgtatctgtgatgtccatccttcaaatctctggttactttcaatg-cttcattgcctctaatcttatttagcttttgtatgtcatctatcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32248254|gb|CD714073.1|CD714073
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|30327891|gb|CD011153.1|CD011153
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|110720016|gb|EE095627.1|EE095627
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|30125799|gb|CB911138.1|CB911138
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|30133769|gb|CB919108.1|CB919108
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|351036166|gb|FQ464011.1|FQ464011
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|71855285|gb|DT004340.1|DT004340
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCGAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|110719628|gb|EE094920.1|EE094920
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|30135395|gb|CB920733.1|CB920733
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|32271216|gb|CD720375.1|CD720375
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|161716956|gb|FC068141.1|FC068141
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|110719627|gb|EE094919.1|EE094919
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|161707320|gb|FC056848.1|FC056848
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|30127312|gb|CB912651.1|CB912651
EST:     GAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: GAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|351044383|gb|FQ452935.1|FQ452935
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|32248260|gb|CD714079.1|CD714079
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|32268821|gb|CD717980.1|CD717980
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|351045775|gb|FQ440960.1|FQ440960
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|110718742|gb|EE095919.1|EE095919
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA