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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTCTTGTTGATCAGTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAGgtatgttgtttaatttgttgaacaggtccattaattcattcctgtttatgataatataatttatgtcactattatgaaaaatatgaaaaaatataataaaatgattttcctgttcctactaacatgattttcctttgcag

Basic information

species Vitis vinifera
transcript Vv07s0031g02690.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G32900.1 (Glycine max), 5'ss of exon 4
GTGCTTCTTGTTGATCAGTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAGgtatgttgtttaatttgttgaacaggtccattaattcattcctgtttatgataatataatttatgtcactattatgaaa-aatatgaaaaaatataataaaatgattttcctgttcctactaacatgattttcctttgcag
 |  ||||||| || |||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||| | | | |     | ||||   | |||      ||| | |||||   || |||||| |   ||  ||||    |    ||| |                                                     
ATTGTTCTTGTCGACCAGTCTGAACGTTTTGTTTTCAAGCCAATGTTGTATGAGCTTCTATCTGGAGgtatgctttattaaac-ctaaacaa--caattgtggttttcttctttattccaaaataattcaa--cagaattacattatggcatgcag----------------------------------------------------

upper sequence: Vv07s0031g02690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G00520.1 (Glycine max), 5'ss of exon 3
GTGCTTCTTGTTGATCAGTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAGgtatg--ttgtttaatttgttgaacaggtccattaattcattcctgtttatgataatataatttatgtcactattatgaaaaatatgaaaaaatataataaaatgattttcctgttcctactaacatgattttcctttgcag
 |  |||||||||| ||||||||| |||||||||| ||||||||||||||||| |||||| | |||||||||  || || ||  |    ||||  | || |      ||| | |||||   ||  | ||| |    |     || ||  | ||| |                                                     
ATTGTTCTTGTTGACCAGTCTGAATGTTTTGTTTTCAAGCCAATGTTGTATGAGCTTCTATCCGGAGgtatgcattattaaacctaaacaacaattgcagt------ttcttctttattccaaagtgattcaacagaactacattaatgacatgcag----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860215|gb|DT009270.1|DT009270
EST:     GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAG                         AAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
genomic: GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAGgtatgttgtt ... tcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
EST: gi|71865150|gb|DT014205.1|DT014205
EST:     GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAG                         AAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
genomic: GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAGgtatgttgtt ... tcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
EST: gi|71862339|gb|DT011394.1|DT011394
EST:     GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAG                         AAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
genomic: GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAGgtatgttgtt ... tcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
EST: gi|71862681|gb|DT011736.1|DT011736
EST:     GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAG                         AAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
genomic: GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAGgtatgttgtt ... tcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
EST: gi|71855322|gb|DT004377.1|DT004377
EST:     GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAG                         AAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGAT
genomic: GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAGgtatgttgtt ... tcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGAT
EST: gi|71863748|gb|DT012803.1|DT012803
EST:     GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAG                         AAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
genomic: GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAGgtatgttgtt ... tcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA