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ATCTGTCAATGGATTACATCAGTTACACATACTCATATTCTTTTTAGCAGTCTTTCATGTCCTATACAGCGCTATCACAATGATGCTCGGGAGACTGAAGgtagtttggaacatgagaattttttttatgtgctttgttgttatacttatggtatgcgatctatatgcatatatgcagtagcttcatcttctgatgcctt...
species | Vitis vinifera |
transcript | Vv07s0031g02240.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTTTCATGTCCTATACAGCGCTATCACAATGATGCTCGGGAGACTGAAG ATTCGTGGCTGGAAGCAGTGGGAGGAGGAGACTTCA-CCCATGACTATGAGEST: gi|122688552|gb|EC920354.1|EC920354
genomic: TCTTTCATGTCCTATACAGCGCTATCACAATGATGCTCGGGAGACTGAAGgtagtttgga ... tcttatgtagATTCGTGGCTGGAAGCAGTGGGAGGAGGAGACTTCAACCCATGACTATGAG
EST: TCTTTCATGTCCTATACAGCGCTATCACAATGATGCTCGGGAGACTGAAG ATTCGTGGCTGGAAGCAGTGGGAGGAGGAGACTTCAACCCATGACTATGAGEST: gi|161713725|gb|FC063750.1|FC063750
genomic: TCTTTCATGTCCTATACAGCGCTATCACAATGATGCTCGGGAGACTGAAGgtagtttgga ... tcttatgtagATTCGTGGCTGGAAGCAGTGGGAGGAGGAGACTTCAACCCATGACTATGAG
EST: TCTTTCATGTCCTATACAGCGCTATCACAATGATGCTCGGGAGACTGAAG ATTCGTGGCTGGAAGCAGTGGGAGGAGGAGACTTCA-CCCATGACTATGAG
genomic: TCTTTCATGTCCTATACAGCGCTATCACAATGATGCTCGGGAGACTGAAGgtagtttgga ... tcttatgtagATTCGTGGCTGGAAGCAGTGGGAGGAGGAGACTTCAACCCATGACTATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGTCAATGGATTACATCAGTTACACATACTCATATTCTTTTTAGCAGTCTTTCATGTCCTATACAGCGCTATCACAATGATGCTCGGGAGACTGAAGgtagtttggaacatgagaattttttttatgtgctttgttgttatacttatggtatgcgatctatatgcatatatgcagtagcttcatcttctgatgcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgagaa