Sequence
atgc intronic sequence ATGC exonic sequenceTTGATAATTAAGGAAAAATCTTTATGTGCAAAGCTTTCTGATATGGGTATTAGCAAGCGCCTTGTTGGGGATATGTCTTCCTTGGGTCATCATGCTACTGgtaagtagtcttggctagttatttctgttaaacctacatctatttaggttctgcatgttatacttatggggttaatgacatctgccaaagttatttcctc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G09240.1 (Glycine max), 5'ss of exon 5
TTGATAATTAAGGAAAAATCTTTATGTGCAAAGCTTTCTGATATGGGTATTAGCAAGCGCCTTGTTGGGGATATGTCTTCCTTGGGTCATCATGCTACTGgtaagtagtcttggctagttatttctgttaaacctacatctatt-taggttctgcatgttatactt---atggggttaatgacatctgccaaagttatttcctc
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TTGATAATAAAAGAAAAATCATTATGTGCAAAGCTTTCTGATATGGGAATTAGTAAACGCCTTCTTGAGGATATGTCTTCTTTGGGTCACACTGTTACTGgtgagtagaagcattgatttacaggtcttagctcttaatcaattctttgttcttattcttaatcttacaataaggttcaatcaatgtcttaattgcatgtag--
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G36200.1 (Glycine max), 5'ss of exon 2
TTGATAATTAAGGAAAAATCTTTATGTGCAAAGCTTTCTGATATGGGTATTAGCAAGCGCCTTGTTGGGGATATGTCTTCCTTGGGTCATCATGCTACTGgtaagtagtcttggctagtt-atttctgttaaacctacatctatt-taggttctgcatgttatacttatggggttaatgacatctgccaaagttatttcctc
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TTGATATTAAAAGAAAAATCATTATGTGCAAAGCTTTCTGATATGGGAATTAGTAAACGCCTTCTTGAGGATATGTCTTCTTTGGGTCACACTGTTACTGgtgagtagaagcgttaattttacaggtcttaactcttaatcaattctttgttcttattcttaatcttacaa---taaggttcaattccttaattgcatgtag
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G21480.1 (Glycine max), 5'ss of exon 5
TTGATAATTAAGGAAAAATCTTTATGTGCAAAGCTTTCTGATATGGGTATTAGCAAGCGCCTTGTTGGGGATATGTCTTCCTTGGGTCATCATGCTACTGgtaagtagtcttggctagttatttctgttaaacctacatctatttaggttctgcatgttatacttatggggttaatgacatctgccaaagttatttcctc----------------
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CTAATAATCAAGGAAAAATCCTTATGTGCAAAGCTTTCTGATATGGGGATTAGCAAATGTCTTTTGGAAAATATGTCTTCTTTGGGTAATAATGCTACTGgtaagtactcctcagaaga-------ataacgagtttgtctttttagct-----atg----gcttatggggccaacattattttctaaaattattttatttttatatttttatttg
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G32970.1 (Glycine max), 5'ss of exon 3
TTGATAATTAAGGAAAAATCTTTATGTGCAAAGCTTTCTGATATGGGTATTAGCAAGCGCCTTGTTGGGGATATGTCTTCCTTGGGTCATCATGCTACTGgtaagtagtcttggctagttatttctgttaaacctacatctatttaggttct--gcatgttatacttatggggttaatgacatctgcca--aagttatttcctc-------
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CTTATAATCAAGGAAAGATCTTTGTGTGCAAAGCTTTCTGATATGGGGATTAGCAAATGTCTTCTTGAAAATATGTCTTCTTTGGGTAATAATGCTACTGgtaagtactccctaaaag-----------aataacgaatttatttgtgttcctagcatttgccatgtgagtagccaattaagtctggcatgagatggatatctatagattaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34547682|gb|CF515914.1|CF515914EST: TAGCAAGCGCCTTGTTGGGGATATGTCTTCCTTGGATCATCATGCTACTG GTTATGGCAGTTCAGGTTGGCAGGCACCTGAGCAGCTTCTTCATGGACGCC
genomic: TAGCAAGCGCCTTGTTGGGGATATGTCTTCCTTGGGTCATCATGCTACTGgtaagtagtc ... caatttgcagGTTATGGCAGTTCGGGTTGGCAGGCACCTGAGCAGCTTCTTCATGGACGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGATAATTAAGGAAAAATCTTTATGTGCAAAGCTTTCTGATATGGGTATTAGCAAGCGCCTTGTTGGGGATATGTCTTCCTTGGGTCATCATGCTACTGgtaagtagtcttggctagttatttctgttaaacctacatctatttaggttctgcatgttatacttatggggttaatgacatctgccaaagttatttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG