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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAAgtatgtttcacacgcacatgaactagattttatataacttgtccattttcctctttttcttatgtttttatttattacttttattagttgattgtggaatatgctgttaggatcctttgcttgaacagtgtacattggtctttgctaatttctgtgttctgttatgtgctgacag

Basic information

species Vitis vinifera
transcript Vv07s0031g01990.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 4
TGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAAgtatgtttcacacgcacatgaactagattttatataacttgtccattttcctctttttcttatgtttttatttattacttttattagttgattgtggaatatgctgttaggatcctttgcttgaacagtgtacattggtctttgctaatttctgtgttctgttatgtgctgacag
||||||||| ||||||||||| || |||||| | ||||||||||| ||||| |||||||||||||| || ||||||||||| || || |||||||||||||||     ||   |  ||  ||    ||  ||     ||||  |  |    |   || ||||   |||||||   | |  |    ||                                                                                        
TGACATTGAGTCTGCTATCAAGACCTACCATCTGATGTCTCAGCGCTGGTTTACTCATGCTTCACCGACCCTTTTCAATGCTGGCACTCCAAGGCCCCAAgtactgcacatttgaccagaaa---aatccta---gtcttggactctgaaattgcttgcttactcttttattctctgcaatg--cag----------------------------------------------------------------------------------------

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 4
TGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAAgta-tgtttcacacgcacatgaactagattttatataacttgtc-cattttcctctttttcttatgtttttatttattacttttattagttgattgtggaatatgctgttaggatcctttgcttgaacagtgtacattggtctttgctaatttctgtgttctgttatgtgctgacag
||| ||||| |||||||||||||| |||||  | ||||||||||| ||||| ||||||||||| || || ||||||||||| || || |||||||| |||||| | |    |   |   |||| |  | |||  || | |        | || | |  | ||     ||||||  |                                                                                                     
TGATATTGAATCTGCTATCAAAACGTACCACATGATGTCTCAGCGCTGGTTTACTCATGCTTCGCCAACCCTTTTCAATGCTGGCACTCCAAGGCCTCAAgtaatatgcttcctaccattgaagtccaatttggattattaaaaatggtctcttatgctcctctctgttttatgcag----------------------------------------------------------------------------------------------------

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G304362_T01 (Zea mays), 5'ss of exon 4
TGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAAgtatgtttcacacgcacatgaactagattttatataacttgtccattttcctctttttcttatgtttttatttattacttttattagttgattgtggaatatgctgttaggatcctttgcttgaacagtgtacattggtctttgctaatttctgtgttctgttatgtgctgacag
 ||||| || ||||| ||||  || |||||| | ||||| ||||| ||||| |||||||||||||| || ||||||||||| || || || ||||||||||||   |       | |   |  |    |   | |   || |  | ||   | |||        ||||| | |  | |                                                                                                 
AGACATCGAGTCTGCCATCAGGACGTACCATCTGATGTCCCAGCGCTGGTTTACTCATGCTTCACCGACGCTTTTCAATGCTGGCACGCCGAGGCCCCAAgtactgtcttgtttcccgccagatgatgtcattgtgggttctgaaattgtttatttactgctgctttttctgtgatgcag-----------------------------------------------------------------------------------------------

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G340527_T01 (Zea mays), 5'ss of exon 4
TGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAAgta-tgtttcacacgcacatgaactagattttatataacttgtccattttcctctttttcttatgtttttatttattacttttattagttgattgtggaatatgctgttaggatcctttgcttgaacagtgtacattggtctttgctaatttctgtgttctgttatgtgctgacag
 |||||||| ||||| || |  || |||||| | ||||| ||||| ||||| || ||||| ||||| || |||||||| || || ||||| |||||||||||| ||| |  |   |      || |  |  | | |   |||   ||| |   |||  | ||   ||| | |     |                                                                                                  
AGACATTGAGTCTGCCATTAGGACGTACCATCTGATGTCCCAGCGCTGGTTTACACATGCATCACCAACACTTTTCAACGCTGGCACACCGAGGCCCCAAgtactgtcttgcttcctgccagacgatgtcat-tgtgggttgaa-attgtttacttactgtttcttttctgtgatgcag-------------------------------------------------------------------------------------------------

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 4
TGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAAgtatgtttcacacgcacatgaactagattttatataacttgtccattttcctctttttcttatgtttttatttattacttttattagttgattgtggaatat-gctgttaggatcctttgc--ttgaacagtgtacattggtctttgctaatttctgtgttctgttatgtgctgacag
|||||||||||||||| ||| |||||||||  | ||||||||| | |||||||||||||| || || || |||||||||||||||||||| ||||| || ||||  ||       |           | ||          ||||| |  | |||||| || ||    | |    | |||||  |  || |||||| || ||  || |   || | | |||  ||| | | |||  ||  |  || ||                              
TGACATTGATTCTGCTGTCAGAACATACCACATGATGTCTCAGAGATGGTTCACTCATGCATCTCCAACACTTTTCAATGCAGGAACACCTAGGCCTCAGgtatagtttctgttaatgc--------tctt------tccctccatgtctcccttttt-ttgtgagcatgtggtgtgctttttgtcctt-attgtgtaagattactatggtgaccttatgcagttggata-tgtttatgtgcattggcag----------------------------

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G39500.1 (Glycine max), 5'ss of exon 4
TGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAAgtatgtttcacacgcacatgaactagattttatataacttgtccattttcctctttttcttatgtttttatttattacttttattagttgattgtggaatatgctgttaggatcctttgcttgaac-agtgtacattggtctttgctaatttctgtgttctgttatgtgctgacag
|||||| |||||||| ||||||||||||||  | |||||||| || ||||| |||||||| || || || ||||||||||| |||||||| ||||| |||||||| || |||      |  || | |   | |  || || |    ||| || | |||  ||| ||| || | ||  | ||    | |||||  | ||  ||     | || ||  ||  || | | ||||| |||  |  |||||                              
TGACATAGATTCTGCCATCAAAACATACCACATGATGTCTCAACGATGGTTTACTCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCAAgtatgatt-acat-----tttaccatacccttttgaaattattatgttttctgtgttt--tatttttgtaataat-gcattagcgaattgatcattgatgat----ctggggtc--ttatttaagcgagtgttcatgtgaatttgcag----------------------------

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 4
TGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAAgtatgtttcacacgcacatgaactagattttatataacttgtccattttcctctttttcttatgtttttatttattacttttattagttgattgtggaatatgctgttaggatcctttgcttgaac-agtgtacattggtctttgctaatttctgtgttctgttatgtgctgacag
|||||| ||||||||| ||||||| |||||  | |||||||| || |||||||| ||||| || || || ||||||||||| |||||||| ||||| ||||||||| |     |||           |||  |||  | | |  |   |  | | |||  | ||| |||  || ||   | || || |  |||  |  || || || |  |  |  ||  || | | ||||| |||  |  |||||                              
TGACATAGATTCTGCTGTCAAAACTTACCACATGATGTCTCAACGATGGTTCACCCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCAAgtatgtct-----gcat----------tttattattcccttttgaaagtattatgttttgtctgtcttttcttgtt---tgtaataatgcatta-gtgatttgatgatctgggctcttatttaagcgagtgttcatatgaatttgcag----------------------------

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 3
-TGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAAgtatgtttcacacgcacatgaactagattttatataacttgtccattttcctctttttcttatgtttttatttattacttttattagttgattgtggaatatgctgttaggatcctttgcttgaacagtgtacattggtctttgctaatttctgtgttctgttatgtgctgacag
 |||||||||||||||| ||| ||| |||||  | ||||||||| | ||||| |||||||| || || || ||||||||| ||| |||||| ||||| || ||||  ||       |           | ||          ||||| |  | ||||||  |     |||  | ||   |||| |    | |||||| ||                                                                            
ATGACATTGATTCTGCTGTCAGAACTTACCACATGATGTCTCAGAGATGGTTTACTCATGCATCTCCAACACTTTTCAATACAG-AACACCTAGGCCTCAGgtatagtttctgttaatgc--------tctt------tccctccatctctcccttttttgtgaacatttggt-atgctttttgtc--cttattgtgtaag---------------------------------------------------------------------------

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 4
TGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAAgtatgtttcacacgcacatgaactagattttatataacttgtccattttcctctttttcttatgtttttatttattacttttattagttgattgtggaatatgctgttaggatcctttgcttgaacagtgtacattggtctttgctaatttctgtgttctgttatgtgctgacag
 ||||||||  |||| ||||| || |||||| | ||||||||||||||||| || ||||| ||||| || || || ||||| || || ||  |||| || ||  ||| |       | |||      |||| ||       || |  |    ||| | |                                                                                                                    
GGACATTGAAGCTGCAATCAAGACGTACCATCTCATGTCTCAGCGTTGGTTTACCCATGCCTCACCAACACTGTTTAATGCTGGGACTCCTCGGCCTCAGgttggttgctt-----cgtgattctccttttgtagtttacttctaactgtgacttctacag------------------------------------------------------------------------------------------------------------------

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ20157 (Selaginella moellendorffii), 5'ss of exon 4
TGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAAgtatgtttcacacgcacatgaactagattttatataacttgtccattttcctctttttcttatgtttttatttattacttttattagttgattgtggaatatgctgttaggatcctttgcttgaacagtgtacattggtctttgctaatttctgtgttctgttatgtgctgacag
 ||||||||  |||| ||||| || |||||| | ||||||||||||||||| || ||||| ||||| || || || ||||| || || ||  |||| || ||  ||| |       | |||      |||| ||      ||  | ||  | || |  ||| |                                                                                                                
GGACATTGAAGCTGCAATCAAGACGTACCATCTCATGTCTCAGCGTTGGTTTACCCATGCCTCACCAACACTGTTTAATGCTGGGACTCCTCGGCCTCAGgttggttgctt-----cgtgattctccttttgta------gtttacttctcactgtgacttctacag------------------------------------------------------------------------------------------------------------