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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGTTCTGATGCCAGTTCTTATGCCAGAGATCTAAAGGATCACATTGACTATGGTACCTCAGGAAAAGTTGCTGGTTTTATTTCTGAAACCATTCAGgttcatgttaattactctttttgaggtgtaaatacattgtttcttactacatgattggaacattatggattccatttcaaaattctcattttggaaaactttag

Basic information

species Vitis vinifera
transcript Vv07s0031g01330.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01330.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G36000.3 (Glycine max), 5'ss of exon 4
CTTTGGTTCTGATGCCAGTTCTTATGCCAGAGATCTAAAGGATCACATTGACTATGGTACCTCAGGAAAAGTTGCTGGTTTTATTTCTGAAACCATTCAGgttcatgttaattactc----tttttgaggtgtaaat---acattgtttcttactac-atgattggaacattatggattccatttcaaaatt--ctcattt--tggaaaactttag
|||||| || ||||||| |   || ||||||||  |  | ||||| ||||||||||| || ||||||||||||||||| |||||  ||||||| |||||||    | | |   |  |    | ||| |  | ||||    | | || |  |||   | |          | | ||| || | | | |   ||  ||||| |  |||     | |||
CTTTGGCTCAGATGCCAATAGGTACGCCAGAGAATTGCAAGATCATATTGACTATGGCACATCAGGAAAAGTTGCTGGATTTATAGCTGAAACAATTCAGgcatgtataatccatccatcatgtttaatttctaaacttcagagtggtatttatagccacacacaccttagtgtggttttcctatgactttttcctcatgtcatggcttcttctag

upper sequence: Vv07s0031g01330.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G36000.1 (Glycine max), 5'ss of exon 4
CTTTGGTTCTGATGCCAGTTCTTATGCCAGAGATCTAAAGGATCACATTGACTATGGTACCTCAGGAAAAGTTGCTGGTTTTATTTCTGAAACCATTCAGgttcatgttaattactctt----tttgaggtgtaaa---tacattgtttcttactac-atgattggaacattatggattccatttcaaaatt--ctcattt--tggaaaactttag----
    || || ||||||| |   || ||||||||  |  | ||||| ||||||||||| || ||||||||||||||||| |||||  ||||||| |||||||    | | |   |  | |    ||| |  | ||||    | | || |  |||   | |          | | ||| || | | | |   ||  ||||| |  |||     | |||    
----GGCTCAGATGCCAATAGGTACGCCAGAGAATTGCAAGATCATATTGACTATGGCACATCAGGAAAAGTTGCTGGATTTATAGCTGAAACAATTCAGGCATgtataatccatccatcatgtttaatttctaaacttcagagtggtatttatagccacacacaccttagtgtggttttcctatgactttttcctcatgtcatggcttcttctagggag

upper sequence: Vv07s0031g01330.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G02440.1 (Glycine max), 5'ss of exon 5
CTTTGGTTCTGATGCCAGTTCTTATGCCAGAGATCTAAAGGATCACATTGACTATGGTACCTCAGGAAAAGTTGCTGGTTTTATTTCTGAAACCATTCAGgttcatgttaattactctt----tttgaggtgtaaat---acattgtttcttacta--catgattggaacat--tatggattccatttcaaaattctcattttggaaaactttag-----
                      || ||||||||  |  | ||||| |||||||||||  | ||||||| ||||||||| |||||  ||||||| |||||||      | |   |  |||    ||| |  | ||||    | | || |  ||| ||   ||      | |||  | ||| || | |||  |  || || |  ||  |    ||       
----------------------TACGCCAGAGAATTGCAAGATCATATTGACTATGGCCCTTCAGGAAGAGTTGCTGGATTTATGGCTGAAACTATTCAGGCATGCATAATCCATCCTTCATgtttaatttctaaacttcagagtggtatttaatatttatagccacaccatagtgtggttttcctttgtactttttcctcatgtcatggcttcttctag