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GAGCGATCCACTGGCCGATCTCGTGGTTTTGGATATGTAACTTTTGGATCAGTTGAAGATGCAAAGgtaatagcaagtttagggtttgttgtaattcagtttctaccataaaatatttttcttatttgttatagctgagtttggctcctcatcaggtaagtattga...
species | Vitis vinifera |
transcript | Vv07s0031g00600.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATCTCGTGGTTTTGGATATGTAACTTTTGGATCAGTTGAAGATGCAAAG AAAGTATTATCAAGTGAGCATTTTCTTGGAAACAGAATGTTGGAAGTGAAAEST: gi|110429617|gb|EC996114.1|EC996114
genomic: GATCTCGTGGTTTTGGATATGTAACTTTTGGATCAGTTGAAGATGCAAAGgtaatagcaa ... ttggctacagAAAGTATTATCAAGTGAGCATTTTCTTGGAAACAGAATGTTGGAAGTGAAA
EST: GATCTCGTGGTTTTGGATATGTAACTTTTGGATCAGTTGAAGATGCAAAG AAAGTATTATCAAGTGAGCATTTTCTTGGAAACAGAATGTTGGAAGTGAAA
genomic: GATCTCGTGGTTTTGGATATGTAACTTTTGGATCAGTTGAAGATGCAAAGgtaatagcaa ... ttggctacagAAAGTATTATCAAGTGAGCATTTTCTTGGAAACAGAATGTTGGAAGTGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCGATCCACTGGCCGATCTCGTGGTTTTGGATATGTAACTTTTGGATCAGTTGAAGATGCAAAGgtaatagcaagtttagggtttgttgtaattcagtttctaccataaaatatttttcttatttgttatagctgagtttggctcctcatcaggtaagtattga
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caggtaa