1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TACTGGGAATCATCTAAAAGGATCACGTCCTCTTTTGACTTTCTCAACCAATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctatttcaattctctggtcaagcactaattctttttagctgttatcgttcacagatggaagagtagatattgaatttatatgtagattataatc...
species | Vitis vinifera |
transcript | Vv07s0005g04550.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|34544827|gb|CF513059.1|CF513059
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGGGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|110417096|gb|EC983122.1|EC983122
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|110723555|gb|EE101001.1|EE101001
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|34549744|gb|CF517976.1|CF517976
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGGGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|110731138|gb|EE109014.1|EE109014
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|30252907|gb|CB970458.1|CB970458
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|110702082|gb|EE080390.1|EE080390
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|110720764|gb|EE096972.1|EE096972
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGANAGCTAAACCTTATCATGATCATEST: gi|30329834|gb|CD013096.1|CD013096
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|110719294|gb|EE097103.1|EE097103
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|110685809|gb|EE062855.1|EE062855
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|110732371|gb|EE107597.1|EE107597
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|110373531|gb|EC937775.1|EC937775
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|27585576|gb|CB008271.1|CB008271
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|110718547|gb|EE095508.1|EE095508
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|30330375|gb|CD013637.1|CD013637
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: CAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|30252991|gb|CB970542.1|CB970542
genomic: CAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATEST: gi|110685111|gb|EE063162.1|EE063162
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
EST: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAG ATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
genomic: ATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctat ... ttttggttagATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTGGGAATCATCTAAAAGGATCACGTCCTCTTTTGACTTTCTCAACCAATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGgtatatctatttcaattctctggtcaagcactaattctttttagctgttatcgttcacagatggaagagtagatattgaatttatatgtagattataatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagta