Sequence
atgc intronic sequence ATGC exonic sequenceATGAACGGGCAGTTCAAGGTGTGACTTATTCTGTGGATATTTGGTTGCACTATTGCATATTTGCCATAAGCACATATGGAGATCCAGATACAATCAGAAGgtaatagcttttcttttgtccattatcattgtagttatacataggagatcatgattgcttgagcttctcgttgtcacgagaatctggtaatctttaattg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g04280.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G35140.1 (Glycine max), 5'ss of exon 4
ATGAACGGGCAGTTCAAGGTGTGACTTATTCTGTGGATATTTGGTTGCACTATTGCATATTTGCCATAAGCACATATGGAGATCCAGATACAATCAGAAGgtaatagcttttcttttgtccattatcattgtagttatacataggagatcatgattg---cttgagct--tctcgttgtcacgagaatctggtaatctttaattg-------------------
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ATGAGCGTGCTGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAAGCACATATGGGGATCCAAACACTGTTCGTAGgtaatggaagtttagttgtttgtcatccttttatttatttatttttttgcattggtagattttgatttgattttccattcactaggctcagctgtttcttgcctgctatctaacccaatttcag
upper sequence: Vv07s0005g04280.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G35140.2 (Glycine max), 5'ss of exon 1
ATGAACGGGCAGTTCAAGGTGTGACTTATTCTGTGGATATTTGGTTGCACTATTGCATATTTGCCATAAGCACATATGGAGATCCAGATACAATCAGAAGgtaatagcttttcttttgtccattatcattgtagttatacataggagatcatgattg---cttgagct--tctcgttgtcacgagaatctggtaatctttaattg
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ATGAGCGTGCTGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAAGCACATATGGGGATCCAAACACTGTTCGTAGgtaatggaagtttagttgtttgtcatccttttatttatttatttttttgcattggtagattttgatttgattttccattcactaggctcagctgtttctt-----
upper sequence: Vv07s0005g04280.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G32410.1 (Glycine max), 5'ss of exon 4
ATGAACGGGCAGTTCAAGGTGTGACTTATTCTGTGGATATTTGGTTGCACTATTGCATATTTGCCATAAGCACATATGGAGATCCAGATACAATCAGAAGgtaatagcttttcttttgtccattatc-----attgtagttatacataggagatcatgattgcttgagct--tctcgttgtcacgagaatctggtaatctttaattg-------------------
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ACGAGCGTGCGGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAACCACATATGGGGATCCAGACACTGTTCGTAGgtaatggaagtttagttgtttgtcttccttttattattattattttttttgcattggtaggttttgatttgatattccattcactaggatcagctgtttcttgcctgctttctaacataatttcag
upper sequence: Vv07s0005g04280.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G04080.3 (Arabidopsis thaliana), 5'ss of exon 4
ATGAACGGGCAGTTCAAGGTGTGACTTATTCTGTGGATATTTGGTTGCACTATTGCATATTTGCCATAAGCACATATGGAGATCCAGATACAATCAGAAGgtaatagcttttcttttgtccattatcat-tgtagttatacataggagatcat--gattgcttgagcttctcgttgtcacgagaatctggtaatctttaattg
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ATGAAAGAGCAGTGCTGGGAGTGACATATTCAGTGGATATCTGGTTGCATTATTGCACTTTTGCCATCAATACATATGGAGATCCAGAAACGATCAGAAGgtaatgaatgcttattcttctatttgtatgtgtattaacaacttggtgattttccaattacctagacaaaatggttttacca---tctaaccctttttttagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71855441|gb|DT004496.1|DT004496EST: TATTGCATATTTGCCATAAGCACATATGGAGATCCAGATACAATCCGAAG GCTGTTTGAACGGGGACTAGCTTATGTAGGAACAGATTACCTGTCATACCC
genomic: TATTGCATATTTGCCATAAGCACATATGGAGATCCAGATACAATCAGAAGgtaatagctt ... ggtgtttcagGCTGTTTGAACGGGGACTAGCTTATGTAGGAACAGATTACCTGTCATACCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGAACGGGCAGTTCAAGGTGTGACTTATTCTGTGGATATTTGGTTGCACTATTGCATATTTGCCATAAGCACATATGGAGATCCAGATACAATCAGAAGgtaatagcttttcttttgtccattatcattgtagttatacataggagatcatgattgcttgagcttctcgttgtcacgagaatctggtaatctttaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgagaa