Sequence
atgc intronic sequence ATGC exonic sequenceGAGCTACTCCTAAGGGTGTACTGAAGCTCATGAAAGTGGAAGGCTTAACCATCTATCATGTAAAAAGCCACTTGCAGgtatatatacttttttactttcatctagaaatgagtccctatcatgatggactttttaaggtttcttgtgatcttgctgaattgaatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g04120.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G006477_T01 (Zea mays), 5'ss of exon 4
GAGCTACTCCTAAGGGTGTACTGAAGCTCATGAAAGTGGAAGGCTTAACCATCTATCATGTAAAAAGCCACTTGCAGgtatatatacttttttactttcatctagaaatgagtccctatcatgatggactttttaaggtttcttgtgatcttgctgaattgaatgcag
|||||||||||||||||| || ||||| |||||||| || || || || || |||||||| ||||||||| ||||||| | || ||| ||||| || | | | | || ||||| | | | | ||| || | | | |||||
AAGCTACTCCTAAGGGTGTGCTAAAGCTTATGAAAGTTGATGGTTTGACTATATATCATGTCAAAAGCCACCTGCAGgtttg----ctgtttagctttc--taagtagtattcttgcccaaaggaggccttttcattttcttatttgaactcgtttgtgt---tgcag
upper sequence: Vv07s0005g04120.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G04540.1 (Glycine max), 5'ss of exon 5
GAGCTACTCCTAAGGGTGTACTGAAGCTCATGAAAGTGGAAGGCTTAACCATCTATCATGTAAAAAGCCACTTGCAGgtatatatacttttttactttcatctagaaatgagtccctatcatgatggactttttaaggtttcttgtgatcttgctgaattgaatgcag
||||||||| |||||||| ||||||||||||||||| ||||| ||||| || |||||||| |||||||| |||||||||| | ||||| | | | || | || || |||| || | | || | | ||||
AAGCTACTCCAAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCATTTGCAGgtatgtgcactttgcttttaactcctttggtttgttcagtagcatg-catttttactgaaacagatttggcttgaaatgaag---------
upper sequence: Vv07s0005g04120.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G18800.1 (Glycine max), 5'ss of exon 2
GAGCTACTCCTAAGGGTGTACTGAAGCTCATGAAAGTGGAAGGCTTAACCATCTATCATGTAAAAAGCCACTTGCAGgtatatatacttttttactttcatctagaaatgagtccctatcatgatggactttttaaggtttcttgtgatcttgctgaattgaatgcag
||||||||| ||||| || ||||||||||||||||| ||||| ||||| || |||||||| |||||||| |||||||||| | ||||| | | | || | || || |||| || | | || | | ||||
AAGCTACTCCAAAGGGCGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCATTTGCAGgtatgtgcactttgcttttaactcctttggtttgttcagtagcatg-catttttactgaaacagatttggcttgaaatgaag---------
upper sequence: Vv07s0005g04120.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G32350.1 (Glycine max), 5'ss of exon 5
GAGCTACTCCTAAGGGTGTACTGAAGCTCATGAAAGTGGAAGGCTTAACCATCTATCATGTAAAAAGCCACTTGCAGgtatatatacttttttactttcatctagaaatgagtccctatcatgatggactttttaaggtttcttgtgatcttgctgaattgaatgcag
||||||| ||||| ||||| ||||||||||||||||| ||||| ||||| || || ||||| ||||||||| | |||||||| | | ||| | || ||| | || | || | | ||||| | | | || |||| || |||||||
GAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATACCATGTTAAAAGCCACCTACAGgtataaacaatttgc-gttgtcttct-----taggtttgtttccttgcgtgcttttgatgaaat------atgctgctccatgaaatgcag
upper sequence: Vv07s0005g04120.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G35080.1 (Glycine max), 5'ss of exon 5
GAGCTACTCCTAAGGGTGTACTGAAGCTCATGAAAGTGGAAGGCTTAACCATCTATCATGTAAAAAGCCACTTGCAGgtatatatacttttttactttcatctagaaatgagtccctatcatgatggactttttaaggtttcttgtgatcttgctgaattgaatgcag
||||||| ||||| ||||| ||||||||||||||||| || || ||||| || || ||||| ||||||||| | |||||||| | | || || | || || | | | ||| || || | || || | || ||||| || |||||||
GAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGATGGATTAACTATATACCATGTTAAAAGCCACCTACAGgtataaacaattcgtt-ttgtcttcataagtttgtttcctttcgtgct---tttgttgaaa--------aatattgctccatgaaatgcag
upper sequence: Vv07s0005g04120.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G28610.1 (Arabidopsis thaliana), 5'ss of exon 4
GAGCTACTCCTAAGGGTGTACTGAAGCTCATGAAAGTGGAAGGCTTAACCATCTATCATGTAAAAAGCCACTTGCAGgtatatatacttttttactttcatctagaaatgagtccctatcatgatggactttttaaggtttcttgtgatcttgctgaattgaatgcag
||||||||||||| || ||||||||| | |||||||| |||||||| || || |||||||| |||||||| || ||||| || || |||| || | || |||| | || || | ||| | | | ||||| | || | |
GAGCTACTCCTAAAGGGGTACTGAAGATTATGAAAGTTGAAGGCTTGACTATATATCATGTTAAAAGCCATTTACAGgttcttactattctttagttcc--ctgctaatgcat-------ataattgtcttctaatattagattgtgttttt-cag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77586746|gb|DV222511.1|DV222511EST: AAAAAGCCACTTGCAG AAATATAGAACAGCGAGATACAGACCAGAGTCATCGGAAG
genomic: AAAAAGCCACTTGCAGgtatatatac ... ttgaatgcagAAATATAGAACAGCGAGATACAGACCAGAGTCATCGGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCTACTCCTAAGGGTGTACTGAAGCTCATGAAAGTGGAAGGCTTAACCATCTATCATGTAAAAAGCCACTTGCAGgtatatatacttttttactttcatctagaaatgagtccctatcatgatggactttttaaggtttcttgtgatcttgctgaattgaatgcag
- - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - TGGAAG