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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGAGAAAGGATACCTTGACTGAAGATGAGGCTAGATTTTATGTTGGAGAAACAGTTTTGGCTATTGAATCTATTCACAAACATAATTACATTCATAGgtttgtaggggacctttattctttttggctatatgtaacttggcatgattctagaggtcgtttcttattgatacaccaaaatgattaattttttctatcccaaattgcatgttgcag

Basic information

species Vitis vinifera
transcript Vv07s0005g03690.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G32160.1 (Glycine max), 5'ss of exon 4
TCATGAGAAAGGATACCTTGACTGAAGATGAGGCTAGATTTTATGTTGGAGAAACAGTTTTGGCTATTGAATCTATTCACAAACATAATTACATTCATAGgtttgtaggggacctttattctttttggctatatgtaacttggcatgattctagaggtcgtttcttattgatacaccaaaatgattaattttttct-atcccaaattgcatgttgcag
||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||| |||||||||||||| || ||||| ||||| || ||||||| | ||                 |||||||| |   ||||   || | ||| |   ||  | | |  || || |   ||||  || ||     || |      | || |  | | | 
TCATGAGAAAGGATACCTTGACTGAAGATGAAGCTCGATTTTATGTAGGAGAAACAATTTTAGCTATTGAATCTATACATAAACACAATTATATACATAGgtatatataaag------------ttggctattt---acttcatattagtcttgcattc--tccattatgctatatttaaatatttcatgcaggcttaggttgcaatgaacttggaa-

upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G18670.2 (Glycine max), 5'ss of exon 4
TCATGAGAAAGGATACCTTGACTGAAGATGAGGCTAGATTTTATGTTGGAGAAACAGTTTTGGCTATTGAATCTATTCACAAACATAATTACATTCATAGgtttgtaggggacc-tttattctttttggctatatgtaacttggcatgattctagaggtcgtttcttattgatacaccaa-aatgattaattttttctatcccaaattgcatgttgcag
| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||||||| || || || ||||| || ||||||| || |     |  || |||   |||      |   || ||  | |  || ||       |  ||| || ||  |     |     |||||| | || |                   
TTATGAGAAAGGATACCTTGACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACAATTTTGGCTATTGAATCTATACATAAGCACAATTATATACATAGgtatgcatatacctgttcatttactttcagagcagtcaaatttccttagttgtaccacatttaacttttttatttagggttagcttctaatttatcctgt-------------------

upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G04410.2 (Glycine max), 5'ss of exon 5
TCATGAGAAAGGATACCTTGACTGAAGATGAGGCTAGATTTTATGTTGGAGAAACAGTTTTGGCTATTGAATCTATTCACAAACATAATTACATTCATAGgtttgtaggggacctttattctttttggctatatgtaacttggcatgattctagaggtcgtttcttattgatacaccaaaatgattaattttt--tctatcccaaattgcatgttgcag
| ||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||| || || || ||||| || ||||||| || |    |   || ||| |||    |    |||        |  ||        |   | | | |  |  |   |   | |||  || |  | | |||                 
TTATGAGAAAGGATATCTTGACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACAGTTTTAGCTATTGAATCTATACATAAGCACAATTATATACATAGgtatgcat---atacttgttcatttactttcggagtagtcctatttccttagttgtaccacatttaacttttctatttag--ggttagcttctaatttgtcctgg--------------

upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G34920.1 (Glycine max), 5'ss of exon 4
TCATGAGAAAGGATACCTTGACTGAAGATGAGGCTAGATTTTATGTTGGAGAAACAGTTTTGGCTATTGAATCTATTCACAAACATAATTACATTCATAGgtttgtaggggacctttattctttttggctatatgtaacttggcatgattctagaggtcgtttcttattgatacaccaaa-atgattaattttttctatcccaaattgcatgttgcag
||||||||||||||| |||||||||||||||  |  |||||||||| || ||||||||||| |||||||||||||| || ||||| ||||| || ||||||| | ||    |     | | |  ||    |||| ||   | ||||  | |   | ||  | | | |   |||  |||   | | |||  ||    ||    || ||| |        
TCATGAGAAAGGATATCTTGACTGAAGATGAAACCCGATTTTATGTGGGGGAAACAGTTTTAGCTATTGAATCTATACATAAACACAATTATATACATAGgtatctacaaaattgacaatttactt---catat-tagtctcgcattctccattatgttatatttaa---atatgccatgtaggcttaggttgcaata----aacttggaa-------

upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S22_429V6.1 (Physcomitrella patens), 5'ss of exon 4
TCATGAGAAAGGATACCTTGACTGAAGATGAGGCTAGATTTTATGTTGGAGAAACAGTTTTGGCTATTGAATCTATTCACAAACATAATTACATTCATAGgtttgtagggg-acctttattctttttggctatatgtaacttggcatgattctagaggtcgtttcttattgatacaccaaaatgattaattttttctatcccaaattgcatgttgcag
||||| | ||||| ||  | || ||||| ||  | ||||||||||||||| ||   ||| ||||||| || || ||||||||||| || |||||||||||||   |  | |     ||    |   ||| ||   || | ||||  | |   |  |  | || | | |   |  ||     || |  |   | |||| |   |               
TCATGCGTAAGGACACACTCACGGAAGACGAATCCAGATTTTATGTTGGACAATGTGTTCTGGCTATCGAGTCAATTCACAAACACAACTACATTCATAGgtacttgagagtgtaattgcgatccctggtta---gttatttggtcttaacttctattttgtgtgtgacatactcaattcgatcaacagaatattctttggga---------------