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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAGTTTGGAAGCTTGAGCAGAAGGGTGGTAGTATAATTGGTGGCACCTTCAAAGCAATCCAGGAGAAAAATAATACTCCCAAGCCTCTGCGAGACCCgtaatatacatgcacataggcttgttttatgattcttccatgaaaatatgttcaatgccctgaatttttcatgcag

Basic information

species Vitis vinifera
transcript Vv07s0005g02540.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045190|gb|FQ451638.1|FQ451638
EST:     CAAAGCAATCCAGGAGAAAAATAATACTCCCAAGCCTCCGCGAGACCC                         GCGTTTGCCAAAGCCAAAGGGGCAAACGGTTGGATCTTTTAAGAAGGGACT
genomic: CAAAGCAATCCAGGAGAAAAATAATACTCCCAAGCCTCTGCGAGACCCgtaatataca ... tttcatgcagGCGTTTGCCAAAGCCAAAGGGGCAAACGGTTGGATCTTTTAAGAAGGGACT
EST: gi|351054509|gb|FQ451985.1|FQ451985
EST:     CAAAGCAATCCAGGAGAAAAATAATACTCCCAAGCCTCCGCGAGACCC                         GCGTTTGCCAAAGCCAAAGGGGCAAACGGTTGGATCTTTTAAGAAGGGACT
genomic: CAAAGCAATCCAGGAGAAAAATAATACTCCCAAGCCTCTGCGAGACCCgtaatataca ... tttcatgcagGCGTTTGCCAAAGCCAAAGGGGCAAACGGTTGGATCTTTTAAGAAGGGACT
EST: gi|110381438|gb|EC934459.1|EC934459
EST:     TTCAAAGCAATCCAGGAGAAAAATAATACTCCCAAGCCTCTGCGAGACCC                         GCGTTTGCCAAAGCCAAAGGGGCAAACGGTTGGATCTTTTAAGAAGGGACT
genomic: TTCAAAGCAATCCAGGAGAAAAATAATACTCCCAAGCCTCTGCGAGACCCgtaatataca ... tttcatgcagGCGTTTGCCAAAGCCAAAGGGGCAAACGGTTGGATCTTTTAAGAAGGGACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAAGTTTGGAAGCTTGAGCAGAAGGGTGGTAGTATAATTGGTGGCACCTTCAAAGCAATCCAGGAGAAAAATAATACTCCCAAGCCTCTGCGAGACCCgtaatatacatgcacataggcttgttttatgattcttccatgaaaatatgttcaatgccctgaatttttcatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA