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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGCAGATAGCATTGAAAGTGATATTGAAAATGTCAAACTGCTTTTGGATTATACAAACCTAATTCCAGAAGGACTTTATCTTGACAAAGCTATGAAGgtaatgatgatatggtccgagtctttggagttggcatttttcttataaggttcagaatcctacttctcttgttatgtgttctttgcaagcttcctaatat...

Basic information

species Vitis vinifera
transcript Vv07s0005g02430.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G27970.1 (Glycine max), 5'ss of exon 5
TGTTGCAGATAGCATTGAAAGTGATATTGAAAATGTCAAACTGCTTTTGGATTATACAAACCTAATTCCAGAAGGACTTTATCTTGACAAAGCTATGAAGgtaatgatgatatggtccgagtctttggagttg-gcatttttcttataaggttcagaatcctacttctcttgttatgtgttctttgcaagcttcctaatat-
||| |||||||||||||| ||||| ||||| ||||| || || |||||  | || |||||  |||||||  |||||||||||||||||| |||||| |||||    ||    |  |   | ||  |  | |   ||||  ||    |   ||    | |   | |  |||  || |||  |||||  || | | | ||| | 
TGTGGCAGATAGCATTGATAGTGACATTGAGAATGTGAAGCTTCTTTTAAACTACACAAATTTAATTCCTAAAGGACTTTATCTTGACAGAGCTATAAAGgtgcgtatttattaatataattcaataaattcatgcatgctttcagttgtgtgttta-tatcaatgttctcattttgtagtcttt-taaacctgcaaatttt

upper sequence: Vv07s0005g02430.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G01660.1 (Arabidopsis thaliana), 5'ss of exon 4
TGTTGCAGATAGCATTGAAAGTGATATTGAAAATGTCAAACTGCTTTTGGATTATACAAACCTAATTCCAGAAGGACTTTATCTTGACAAAGCTATGAAGgtaatgatgatatggtccgagtctttggagttggcatttttcttataaggttcagaatcctacttctc--------ttgttatgtgttctttgcaagct-tcctaatat--------------------------------
 |||||  | |||||||||||||||||||||||||||| ||   | ||  |||||||||| ||||||||| | ||||| | ||| |||| |||||| |||||| || | || |  ||    | | |  ||     |  ||   | |  | ||    ||  ||  | |          | | |||| ||     | |||  || |    |                                
CGTTGCCAACAGCATTGAAAGTGATATTGAAAATGTCAGACGCTTGTTAAATTATACAAATCTAATTCCAAAGGGACTGTTTCTAGACAGAGCTATAAAGgtattgtt-atcttatcgagctttatttagacaatacattcagtttctgattgtatatgttaggtatagaaaaacactctgatgtattgcaaacgagcaatctttccgtgtctttatgagtcatgacgaagattttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30132520|gb|CB917859.1|CB917859
EST:     AATTCCAGAAGGACTTTATCTTGACAAAGCTATGAAG                         GTGGCGAAGGAGGAATTATCTCGTGAATGTGACTATGAGCTGGAAGCTACA
genomic: AATTCCAGAAGGACTTTATCTTGACAAAGCTATGAAGgtaatgatga ... ttcttgacagGTGGCAAAGGAGGAATTATCTCGTGAATGTGACTATGAGCTGGAAGCTACA