1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACCATCAGCTATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAGTGTTCCAGgtaagagtttggtgagtgggtaatgggtatctgagtaacggcctgtgtgttctggctgaaacaaattttatgtcttgatttggtcaaataaggatatatatgcttcttttatgcag
species | Vitis vinifera |
transcript | Vv07s0005g02100.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAGTGTTCCAG GCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTAAAAAAGTTCTTCAAEST: gi|71862885|gb|DT011940.1|DT011940
genomic: ATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAGTGTTCCAGgtaagagttt ... ttttatgcagGCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTAAAAAAGTTCTTCAA
EST: ATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAGTGTTCCAG GCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTEST: gi|110703118|gb|EE079682.1|EE079682
genomic: ATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAGTGTTCCAGgtaagagttt ... ttttatgcagGCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATT
EST: ATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAGTGTTCCAG GCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTAAAAAAGTTCTTCAAEST: gi|110685785|gb|EE062810.1|EE062810
genomic: ATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAGTGTTCCAGgtaagagttt ... ttttatgcagGCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTAAAAAAGTTCTTCAA
EST: ATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAGTGTTCCAG GCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTAANAAAGTTCTTCAAEST: gi|110710881|gb|EE087442.1|EE087442
genomic: ATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAGTGTTCCAGgtaagagttt ... ttttatgcagGCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTAAAAAAGTTCTTCAA
EST: GGAGTAGTGTTCCAG GCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTAAAAAAGTTCTTCAAEST: gi|71875370|gb|DT024425.1|DT024425
genomic: GGAGTAGTGTTCCAGgtaagagttt ... ttttatgcagGCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTAAAAAAGTTCTTCAA
EST: ATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAGTGTTCCAG GCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTAAAAAAGTTCTTCAAEST: gi|30252766|gb|CB970317.1|CB970317
genomic: ATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAGTGTTCCAGgtaagagttt ... ttttatgcagGCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTAAAAAAGTTCTTCAA
EST: GCATGGATCTGANTGGAGTAGTGTTCCAG GCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTAAAAAAGTTCTTCAAEST: gi|71875374|gb|DT024429.1|DT024429
genomic: GCATGGATCT-TTTGGAGTAGTGTTCCAGgtaagagttt ... ttttatgcagGCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTAAAAAAGTTCTTCAA
EST: ATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAGTGTTCCAG GCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTAAAAAAGTTCTTCAA
genomic: ATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAGTGTTCCAGgtaagagttt ... ttttatgcagGCAAAGTGCTTAGAGACTGGTGAAACAGTTGCAATTAAAAAAGTTCTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCATCAGCTATATGGCAGAGCGTGTTGTTGGGCATGGATCTTTTGGAGTAGTGTTCCAGgtaagagtttggtgagtgggtaatgggtatctgagtaacggcctgtgtgttctggctgaaacaaattttatgtcttgatttggtcaaataaggatatatatgcttcttttatgcag
- - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - TTGGAG