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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctatggcttcagccccttgcatttaggggcatttctataagcatttaggggcatttctataaatggattatgaacttgaaagtttttttcttggtgttttacattattgaag

Basic information

species Vitis vinifera
transcript Vv07s0005g00740.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G02130.1 (Glycine max), 5'ss of exon 4
GTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctatggcttcagccccttgcatttaggggcatttctataagcatttaggggcatttctataaatggattatgaacttga-aagtttttttcttggtgttttacattattgaag
|| || ||||||||||| | |||||| ||| | ||||||||||  ||||||   |||||||||||||||||||||||||| |||||||||||||||| | |    ||   |  || |     |   |   ||    | ||      | | |||    || | |  |  ||    ||||  | |  || |  ||||                 
GTCTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAGgtaaagtttcaact---gttccatatgagtgatgttgttcagtttagttggatgagacataatcattactcaa--attcttttgatgaataattattatggtag---------------

upper sequence: Vv07s0005g00740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G01990.1 (Glycine max), 5'ss of exon 4
GTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctatggcttcagccccttgcatttaggggcatttctataagcatttaggggcatttctataaatggattatgaacttgaaagtttttttcttggtgttttacattattgaag
|| || ||||||||||| | |||||| ||| | ||||||||||  ||||||   ||||||||||||||||| |||||||| ||||| |||||||||| | |    |||  |  |  |  | ||||  |       || |  | | |  | |  ||   | |||    |   |                                       
GTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAGgtaaagtttcaactt--gttcagtttagttagatgagacataatcattactcaaagtc--tttggtgaataatatggtag--------------------------------------

upper sequence: Vv07s0005g00740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G37420.1 (Glycine max), 5'ss of exon 4
GTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctatggcttcagccccttgcatttaggggcatttctataagcatttaggggcatttctataaatggattatgaacttgaaagtttttttcttggtgttttacattattgaag
|| || |||||||| || |  || || ||| | ||||||||||| |||||   |  |||||||||||||||||| ||||| |||||||||||||||| | | |   |||        |  |  |  ||  ||  | |  | | |     | |   | | || ||  ||     ||| |   |  |||| |   | | | |           
GTTTTCCAGTTTGCCGATAAATATAGGGGACCCTACAGCAATGGCTTGAAGCCCGTTGTGTGCCCCTTCTATTGTTCTTACTCTGGTTATCAGgtaaagttctaatttcttttttaagt-tccataggttttgatgtgtgaagtataaagtaaagcaagaagtgtttt-----cttaatgatgattttgtaaatctgtcag----------

upper sequence: Vv07s0005g00740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G40030.1 (Glycine max), 5'ss of exon 6
GTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctatggcttcagccccttgcat-ttaggggcatttctataagcat--ttaggggcatttctataaatggattatgaacttgaaagtttttttcttggtgttttacattattgaag
|| || ||||||||||| |  || || ||| | ||||||||||| |||||   |  |||||||||||||||||| ||||| ||||| ||||| |||| | |     ||   |   |||||| || |  |  |      ||| |     ||| |  ||||  |||     | |||   | |||| | |                           
GTTTTCCAGTTTGCTGATAAATATAGGGGACCCTACAGCAATGGCTTGAAGCCCATTGTGTGCCCCTTCTATTGTTCTTACTCTGGCTATCAAgtaaagttccaattttt-caagttgcatatttgatgtgtaaagtaaagtaaagcaaggagtgtttccttaa-----tgatgctttggaaaatgtcag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349828703|gb|FQ418438.1|FQ418438
EST:     GATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAG                         GATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
genomic: GATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctat ... attattgaagGATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
EST: gi|351029054|gb|FQ435254.1|FQ435254
EST:     GATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAA                         GAATAAGTTGCTGTGGGGGTGCTGCATGGTTGCACAAAACCACCAAGAAAC
genomic: GATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctat ... attattgaagGA-TGAGTTGCTGTGGGG-TGCTGCATGGTTGCACAAAGCCACCAGGAACC
EST: gi|77586578|gb|DV222413.1|DV222413
EST:     TTCTATTGCTCTTATTCTGGTTATCAG                         GATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
genomic: TTCTATTGCTCTTATTCTGGTTATCAGgtaaggctat ... attattgaagGATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
EST: gi|161715260|gb|FC065809.1|FC065809
EST:     GATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAG                         GATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
genomic: GATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctat ... attattgaagGATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
EST: gi|156739183|gb|EV243304.1|EV243304
EST:     GATTGAAAAAATATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAG                         GATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
genomic: GATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctat ... attattgaagGATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
EST: gi|110700767|gb|EE077711.1|EE077711
EST:     GATTGAAAAAATATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAN                         GATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
genomic: GATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctat ... attattgaagGATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
EST: gi|110687298|gb|EE064584.1|EE064584
EST:     GATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAG                         GATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
genomic: GATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctat ... attattgaagGATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
EST: gi|71874084|gb|DT023139.1|DT023139
EST:     TTCTATTGCTCTTATTCTGGTTATCAG                         GATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
genomic: TTCTATTGCTCTTATTCTGGTTATCAGgtaaggctat ... attattgaagGATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
EST: gi|351043975|gb|FQ431406.1|FQ431406
EST:     GATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAG                         GATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
genomic: GATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctat ... attattgaagGATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
EST: gi|110701944|gb|EE080092.1|EE080092
EST:     GATTGAAAAAATATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAG                         GATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
genomic: GATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctat ... attattgaagGATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
EST: gi|71877408|gb|DT026463.1|DT026463
EST:     GATTGAAAAAATATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAG                         GATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC
genomic: GATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctat ... attattgaagGATGAGTTGCTGTGGGGTGCTGCATGGTTGCACAAAGCCACCAGGAACCCC