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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGGTTGTTCAGGAGAAGAAGGTGCTGGAAGTCATTGTGGAAAAGGGCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttgatgaatcttataatactatctatagatagatatttgttgatgattttatctgcttgttttgggtcattttgcag

Basic information

species Vitis vinifera
transcript Vv06s0080g01230.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g01230.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g57340.1 (Oryza sativa), 5'ss of exon 4
TGAGAAGGTTGTTCAGGAGAAGAAGGTGCTGGAAGTCATTGTGGAAAAGGGCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttt-tgatgaatcttataatactatcta-tagatagatatttgttg-atgattttatctgcttgttttgg--gtcattttgcag----------------
||||||||| |  |||||||||||||| || || ||  | || || ||||||||||| |||||||||||  | || || ||||| || |||||||||||||||||| | || |    ||  |   | | |  | || || | | |  | || |  | |  || |||||||       || | |   ||                 
TGAGAAGGTGGCGCAGGAGAAGAAGGTTCTTGAGGTGGTGGTCGAGAAGGGCATGCAGAATGGACAGAAGATCACCTTCCCTGGTGAGGCTGATGAAGCGgtatgtctgtgttctgactcctcgcattgtacagtacatggttctaaggtgtagtactccatgtgcttgtcaacactgttactgaccaacctgtgctttgtgcag

upper sequence: Vv06s0080g01230.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G134917_T01 (Zea mays), 5'ss of exon 4
TGAGAAGGTTGTTCAGGAGAAGAAGGTGCTGGAAGTCATTGTGGAAAAGGGCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttgatga-atcttataatactatctata-gatagatatttgttgatgattttatctgcttg-ttttgggtcattttgcag---------------------
||| || ||||| |||||||||||||| || |||||  ||||||| || |||||||| ||||| |||||  | ||||| ||||| ||||||||||||||||||||   ||||    || |     |   || ||  | |   |  || ||| |   | |  |   | |   ||||||| |     ||                     
TGATAAAGTTGTGCAGGAGAAGAAGGTTCTTGAAGTGTTTGTGGAGAAAGGCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactgattctgtccttgccaatcgtcaatttggttccttgttattgctatatgtgccaaatagaccttgggtcctaacctagctatctggtgattgtgtgcag

upper sequence: Vv06s0080g01230.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G38790.1 (Glycine max), 5'ss of exon 4
TGAGAAGGTTGTTCAGGAGAAGAAGGTGCTGGAAGTCATTGTGGAAAAGGGCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttgatgaatcttataatactatctatagat-agatatttgttgatgattttatctgcttgttttgggtcattttgcag
 ||||||||||||||||||||||| || || |||||  ||||||| ||||| ||||| |||||||||||  ||||||| ||||| ||||||||||||||||||||||     ||   ||   || ||  |  |  |  ||||  | |   |  ||||| |  |||  |||| |    ||||||||
AGAGAAGGTTGTTCAGGAGAAGAAAGTACTTGAAGTTGTTGTGGAGAAGGGAATGCAGAATGGACAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCGgtatgtt-----gagctttg--atgctgacactgtaccagattatggaaaactattttttgagctattttttg----ttttgcag

upper sequence: Vv06s0080g01230.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G31620.2 (Glycine max), 5'ss of exon 4
TGAGAAGGTTGTTCAGGAGAAGAAGGTGCTGGAAGTCATTGTGGAAAAGGGCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttgatgaatcttataatactatctatagatagatatttgttgatgattttatctgcttgttttgggtcattttgcag
 ||||| ||||||||||||||||| || || |||||  ||||||| ||||| ||||| |||||||||||  ||||||| ||||| |||||||||||||| |||||||     ||   ||   |||| | |        |   | ||   || |   |  |   |  | ||   |  ||||||||
AGAGAAAGTTGTTCAGGAGAAGAAAGTACTTGAAGTTGTTGTGGAGAAGGGAATGCAGAATGGACAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCAgtatgtt-----gagctttg--ataccaacaccgtgctggattatggaaattaggctgacc-ttgatctttttttgttttgcag

upper sequence: Vv06s0080g01230.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G10150.2 (Glycine max), 5'ss of exon 4
TGAGAAGGTTGTTCAGGAGAAGAAGGTGCTGGAAGTCATTGTGGAAAAGGGCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttgatga------atcttataatactatctatagatagatatttgttgatgattttatctgcttgt---tttgggtcattttgcag
 ||||||||||| ||||||||||| || || ||||| ||||| |||||||| ||||| ||||| |||||  | ||||| ||||| ||||||||||||||||||||||   ||||       | || ||||      | |   |      |||  ||   || ||    |   |   ||   |  |||||||||
AGAGAAGGTTGTGCAGGAGAAGAAAGTCCTTGAAGTTATTGTAGAAAAGGGGATGCAGAATGGGCAGAAGATAACATTCCCTGGCGAAGCTGATGAAGCGgtatgttgatatgagaatcagtattgtaatttgcattgtgcttcatggattgcagaaatttataatgacccatgagttgttggtattttgcag

upper sequence: Vv06s0080g01230.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G17930.1 (Glycine max), 5'ss of exon 4
TGAGAAGGTTGTTCAGGAGAAGAAGGTGCTGGAAGTCATTGTGGAAAAGGGCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttgatgaatcttataatactatctatagatagatatttgttgatgattttatctgct-tgttttgggtc------attttgcag
 || |||||||| |||||||| || || || ||||| |||||||||||||| ||||| || || |||||  ||||||| ||||| |||||||||||||||||||| |   ||||   || ||||   || |  |  | |    |  | ||| |    || |    || | || ||       |||||||||
AGAAAAGGTTGTGCAGGAGAAAAAAGTCCTTGAAGTTATTGTGGAAAAGGGAATGCAGAACGGGCAGAAGATTACATTCCCTGGCGAAGCTGATGAAGCGgtatgctgatatgagaattgtaatgtcatttgca--ttgtgtctcatggatcacagaatttataatgatctgagttgtttgtattttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110426729|gb|EC993147.1|EC993147
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|33404304|gb|CF209931.1|CF209931
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|110700026|gb|EE077598.1|EE077598
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|32268710|gb|CD717869.1|CD717869
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|110387592|gb|EC952273.1|EC952273
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|37188806|gb|CF608155.1|CF608155
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|33404390|gb|CF210017.1|CF210017
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|110357032|gb|EC920291.1|EC920291
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|34550729|gb|CF518947.1|CF518947
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|33401675|gb|CF207302.1|CF207302
EST:     TGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: TGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|110370916|gb|EC934533.1|EC934533
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAA
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAA
EST: gi|26257948|gb|CA809011.1|CA809011
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|161720319|gb|FC071172.1|FC071172
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|110720243|gb|EE095996.1|EE095996
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|33408559|gb|CF214186.1|CF214186
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGGATCNGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|110725781|gb|EE102678.1|EE102678
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|32268367|gb|CD717526.1|CD717526
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|26264365|gb|CA815428.1|CA815428
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAGCAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|110715780|gb|EE094221.1|EE094221
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGGATATAGTTTTTGTCCTCCAGCAAAAGGGACA
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGG-ATATAGTTTTTGTCCTCCAGCAAAAGGAACA
EST: gi|27580318|gb|CB003013.1|CB003013
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|110703924|gb|EE081284.1|EE081284
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|26263257|gb|CA814320.1|CA814320
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|71864345|gb|DT013400.1|DT013400
EST:     CAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: CAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|110732191|gb|EE107262.1|EE107262
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|32265264|gb|CD716853.1|CD716853
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|110710348|gb|EE086606.1|EE086606
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|33408129|gb|CF213756.1|CF213756
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|110361232|gb|EC924690.1|EC924690
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|110357485|gb|EC921063.1|EC921063
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|34549042|gb|CF517274.1|CF517274
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAC
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|71883426|gb|DT032481.1|DT032481
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|28968729|gb|CB347762.1|CB347762
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|28968571|gb|CB347604.1|CB347604
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|29783677|gb|CB350006.2|CB350006
EST:     ATGCAAAAT-GATCAGAAAGTTACANTTCCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: ATGCAAAATGGA-CAGAAAGTTACA-TTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|110363905|gb|EC927537.1|EC927537
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: gi|110732820|gb|EE108451.1|EE108451
EST:     GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG                         CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGAAGGTTGTTCAGGAGAAGAAGGTGCTGGAAGTCATTGTGGAAAAGGGCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttgatgaatcttataatactatctatagatagatatttgttgatgattttatctgcttgttttgggtcattttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC