Sequence
atgc intronic sequence ATGC exonic sequenceCTTTATTCACAGCCAGGCCTGCAGCTACTCTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCAAAGAgtagttttctccatctttgaccatttctttttcattaataaccttaatactgcaacatcctctctggtctctacaactttccttctcttctactggtgct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0080g00360.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os05g37170.8 (Oryza sativa), 5'ss of exon 2
---CTTTATTCACAGCCAGGCCTGCAGCTACTCTGGAAATGTTCCCTTCATGGCCAATGAGA---TTCCAGCAAACCCAAAGAgtag-------ttttctccatctttgaccatttcttt---ttcattaataaccttaatactgcaacatcctctctggtctctacaactttccttctcttctactggtgct-------------------------
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CAGGATATCTTGCAGCTAGGCCCCC---CACACTGGAAATCTTCCCTTCATGGCCAATGAGTCATCTACAGGAGCCATACAGTgtaagcactgcttctcttgatcagtaacagtctcctacagtttcttactgactgcaacagaaaaaaagtgttcttgcttaattagctgctcactgtctgctcctcttgtttctttgattaattgctttatagcag
upper sequence: Vv06s0080g00360.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os05g37170.3 (Oryza sativa), 5'ss of exon 3
------CTTTATTCACAGCCAGGCCTGCAGCTACTCTGGAAATGTTCCCTTCATGGCCAATGAGAT---TCCAGCAAACCCAAAGAgtag-------ttttctccatctttgaccatttctt---tttcattaataaccttaatactgcaacatcctctctggtctctacaactttccttctcttctactggtgct-------------------------
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CAGCAGGATATCTTGCAGCTAGGCCCCC---CACACTGGAAATCTTCCCTTCATGGCCAATGAGTCATCTACAGGAGCCATACAGTgtaagcactgcttctcttgatcagtaacagtctcctacagtttcttactgactgcaacagaaaaaaagtgttcttgcttaattagctgctcactgtctgctcctcttgtttctttgattaattgctttatagcag
upper sequence: Vv06s0080g00360.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os05g37170.6 (Oryza sativa), 5'ss of exon 1
-----------------------CTTTATTCACAGCCAGGCCTGCAGCTACTCTGGAAATGTTCCCTTCATGGCCAATGAGAT---TCCAGCAAACCCAAAGAgtag-------ttttctccatctttgaccatttcttt---ttcattaataaccttaatactgcaacatcctctctggtctctacaactttccttctcttctactggtgct----------------------
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CATTTGTATGTATGCAGCAGCAGGATATCTTGCAGCTAGGCCCCC---CACACTGGAAATCTTCCCTTCATGGCCAATGAGTCATCTACAGGAGCCATACAGTgtaagcactgcttctcttgatcagtaacagtctcctacagtttcttactgactgcaacagaaaaaaagtgttcttgcttaattagctgctcactgtctgctcctcttgtttctttgattaattgctttatag
upper sequence: Vv06s0080g00360.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G30990.1 (Glycine max), 5'ss of exon 4
CTTTATTCACAGCCAGGCCTGCAGCTACTCTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCAAAGAgtagttttctccatctttgaccatttct-----ttttcattaataaccttaatactgcaacatcctctctggtctctacaactttccttctcttctactggtgct
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CTTTATTCACAGCCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCCAAGAgtactagtctcc-tacttgtccatctttgaccatttatttaaacatgcttttaattgct-tatgcttacaagt-tcaagaaatctcaatattttatttttttt--
upper sequence: Vv06s0080g00360.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G09430.3 (Glycine max), 5'ss of exon 4
CTTTATTCACAGCCAGGCCTGCAGCTACTCTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCAAAGAgtagttttctccatctttgaccatttctttttcattaataaccttaatactgcaacatcctctctggtctc-tacaactttccttctcttctactggtgct
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CTTTATTCACAGGCAGGCCTTCGGCCACACTGGAAATGTTCCCCTCATGGCCAATGAGATTCCAGCAAACCTCAAGAgtactactctgtctctctctctctcacttctccatctttgaccaatccatatccatagatgcttaaaactagcgcaacttcaataatatcccaatctttt-
upper sequence: Vv06s0080g00360.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G09430.2 (Glycine max), 5'ss of exon 3
---CTTTATTCACAGCCAGGCCTGCAGCTACTCTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCAAAGAgtagttttctccatctttgaccatttctttttcattaataaccttaatactgcaacatcctctctggtctc-tacaactttccttctcttctactggtgct
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CAGCTTTATTCACAGGCAGGCCTTCGGCCACACTGGAAATGTTCCCCTCATGGCCAATGAGATTCCAGCAAACCTCAAGAgtactactctgtctctctctctctcacttctccatctttgaccaatccatatccatagatgcttaaaactagcgcaacttcaataatatcccaatctttt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715403|gb|FC065830.1|FC065830EST: CTCTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCAAAGA GGAAGTTCAAAGTCAGGAGGAGAGAGCACTGACTCAGGATCAGCAGTGAAC
genomic: CTCTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCAAAGAgtagttttct ... ttcaactcagGGAAGTTCAAAGTCAGGAGGAGAGAGCACTGACTCAGGATCAGCAGTGAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTTATTCACAGCCAGGCCTGCAGCTACTCTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCAAAGAgtagttttctccatctttgaccatttctttttcattaataaccttaatactgcaacatcctctctggtctctacaactttccttctcttctactggtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctc