Sequence
atgc intronic sequence ATGC exonic sequenceCAGGATTTTACTCCAGAGCAACTGCGGTGCAAGTGTGCTGGATTTCACTCCACAAGCTGATGGTGGGCCTCCATATATTTGTCTTAATCGTTTAAATCAGgtatatggtttaatgcatagaaaatttaatatgcaaatttttacactatttttacttggttgcttggttgtctttatgtctgggccgtgtcaatgatttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os11g05260.1 (Oryza sativa), 5'ss of exon 3
CAGGATTTTACTCCAGAGCAACTGCGGTGCAAGTGTGCTGGATTTCACTCCACAAGCTGATGGTGGGCCTCCATATATTTGTCTTAATCGTTTAAATCAGgtatatggtttaatgcatagaaaatttaat---atgcaaatttttacactatttttacttggttgcttggttgtctttatgtctgg-gccgtgtcaatgatttt-------------------------------------------------------------------------------------
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TCGGATTCTACTTCAGAGCAATTGTGGTGCTAGTGTGCTGGATTTCACCCCTCAGGCTGGTGGAGGGCCTCCAGCTGTATGCCTTAACCGCTTAAATCAGgtgtgtgtgtgcatgtgtgtaactttcagttggatggatgttttttttttccttttagtagtatgccttgcctaatgcaagtttcgtaccatcttctggataagtaaaataaaataattttgtgtcaaaacagaactacaggtggaaaaccagtaaatataggatttaattgtgtttccatgtttgcag
upper sequence: Vv06s0061g01340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G09100.1 (Glycine max), 5'ss of exon 4
CAGGATTTTACTCCAGAGCAACTGCGGTGCAAGTGTGCTGGATTTCACTCCACAAGCTGATGGTGGGCCTCCATATATTTGTCTTAATCGTTTAAATCAGgtatatggtttaatgcatagaaaatt-taatatgcaaatttttacactatttttacttggttgcttggttgtctttatgtctgggccgtgtcaatgatttt
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CAGAACATTACTTCAGAGCAATTGTGGTGTTAGTGTGCTGGATTTCATCCCGAGATCTGAGGGTGGGTCTCCACATATTTGCCTTAACCGCTTAAATCAGgtatataatttactgggtacaatgccacaaagtgaactagctgaggttaaatgtggg-actggctttgttatcccctggtctgaacttcaaagttgatgtg
upper sequence: Vv06s0061g01340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G19400.1 (Glycine max), 5'ss of exon 4
CAGGATTTTACTCCAGAGCAACTGCGGTGCAAGTGTGCTGGATTTCACTCCACAAGCTGATGGTGGGCCTCCATATATTTGTCTTAATCGTTTAAATCAGgtatatgg----tttaatgcatagaaaatt-taatatgcaaatttttacactatttttacttggttgcttg-gttgt-ctttatgtctgggccgtgtcaatgatttt--------------------------------------------------------------
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CAGAACATTACTTCAGAGCAATTGTGGTGTTAGTGTGCTGGATTTCATCCCGAGATCTGAGGGTGGGTCTCCACATATTTGCCTTAACCGCTTAAATCAGgtatatagtacatttaccaggtacaatgccacaaagtggactagctgaggttaaatgtgagaggcagattgtgttattccctctctataaacaaaagttgttttttttttattacaatgtgctccgcagtttaagctgttctacaaacagaattgaactattaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352786696|gb|FQ479903.1|FQ479903EST: CACAAGCTGATGGTGGGCCTCCATATATTTGTCTTAATCGTTTAAATCAG ACCCCTAGTTC
genomic: CACAAGCTGATGGTGGGCCTCCATATATTTGTCTTAATCGTTTAAATCAGgtatatggtt ... attgatgcagACCCCTAGTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGGATTTTACTCCAGAGCAACTGCGGTGCAAGTGTGCTGGATTTCACTCCACAAGCTGATGGTGGGCCTCCATATATTTGTCTTAATCGTTTAAATCAGgtatatggtttaatgcatagaaaatttaatatgcaaatttttacactatttttacttggttgcttggttgtctttatgtctgggccgtgtcaatgatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagaaaa