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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGAATATTGGTGGGAGAGAGTTTGCTGAATCTTTAGCTCCTGATGTTCAAAAGTTACTTgtaagggtgaacatgactttgtttctttaattttcaattggcatttatggaatataaaggatataactgctttttattttttcccttttgggcatggggttggcgatggatgggttgtggtttcattggttgttggttcag

Basic information

species Vitis vinifera
transcript Vv06s0061g01170.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 4
GTTGGGAATATTGGTGGGAGAGAGTTTGCTGAATCTTTAGCTCCTGATGTTCAAAAGTTACTTgtaagggtgaacatgactttgtttctttaattttcaattggcatttatggaatataaaggatat-aactgctttttattttttcccttttgggcatggggttggcgatggatgggttgtggtttcattggttgttggttcag
||||| ||||||||||||||||| |||||||| || ||||| |||||||| || |||||  | |||||    |  ||  | ||    | |||| |   |  |||| |   ||||| |  |  ||| | |||||| |||| |  | |                                                           
GTTGGAAATATTGGTGGGAGAGAATTTGCTGAGTCCTTAGCACCTGATGTACAGAAGTTGTTGgtaagaa--attattgcattag--cattaaat---aggtggcttgattggaaaaatattgatgttaactgcattttgtgatctag---------------------------------------------------------

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 4
GTTGGGAATATTGGTGGGAGAGAGTTTGCTGAATCTTTAGCTCCTGATGTTCAAAAGTTACTTgtaagggtgaacatgactttgtt-tctttaattttcaattggcatttatggaatataaaggatataactgctttttattttttcccttttgggcatggggttggcgatggatgggttgtggtttcattggttgttggttcag
||||| ||||||||||||||||| ||||| ||||| ||||| || ||||| || ||||| || |||||       || |||   || || |||| |   |  |||| |   ||||| |||  |    | ||||| |||| |  | |                                                           
GTTGGAAATATTGGTGGGAGAGAATTTGCCGAATCCTTAGCACCAGATGTACAGAAGTTGCTGgtaagaa-----attactgcattatcattaaat---aggtggcttgattggaaaatattgatgttgactgcattttgtgatctag---------------------------------------------------------

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTGGGAATATTGGTGGGAGAGAGTTTGCTGAATCTTTAGCTCCTGATGTTCAAAAGTTACTTgtaagggtgaacatgactttgtttctttaattttcaattggcatttatggaatataaaggatataactgctttttattttttcccttttgggcatggggttggcgatggatgggttgtggtttcattggttgttggttcag
||||| ||||||||||| ||||| ||||||||||| || || ||||||||||||||| |||||||||| |    |   |  |    | ||   ||||   |    || || | ||        |||||| || |||     || | |  |   |                                                  
GTTGGAAATATTGGTGGAAGAGATTTTGCTGAATCATTGGCACCTGATGTTCAAAAGCTACTTgtaagtgactcccaaagatgacatgttatgttttttttcccgatataagtaa------acatataaatgttttggggcttgttcgctgcag--------------------------------------------------

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTGGGAATATTGGTGGGAGAGAGTTTGCTGAATCTTTAGCTCCTGATGTTCAAAAGTTACTTgtaagggtgaacatgactttgtttctttaattttcaattggcatttatggaatataa-aggatataactgctttttattttttcccttttgggcatggggttggcgatggatgggttgtggtttcattggttgttggttcag
||||| ||||| ||||| || || ||||||||||| || || ||||||||||||||| |||||||||| |    |   |  |      ||  |||||        ||| |   || |||  | | |||     || |||  |                                                               
GTTGGAAATATCGGTGGAAGGGATTTTGCTGAATCATTGGCACCTGATGTTCAAAAGCTACTTgtaagtgactcctaaagatgagaggttatatttttttccaatatt-actaaacatattatgttatggggtctctttgctgcag-----------------------------------------------------------