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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaatcagctcaaagttaagcaactattttgtttgtctttagtgacccatgtctgatatgcatctatattgacag

Basic information

species Vitis vinifera
transcript Vv06s0061g00770.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00770.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G08670.1 (Glycine max), 5'ss of exon 4
GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaatcagctcaaagttaagcaactattttgtttgtctttagtgaccc-atgtctgatatgcatctatattgacag
|||||||||||||| |||||| | |||||||| |||||||||||||| |||||||||||||| || |||||||| |||||||| ||||| ||||||||||| | |    | || |||   | |  |   | ||| | |   | ||  ||     ||||| || |     |  |||   ||
GTAAAAGAAGAGGCACAACAACTTGCTCTAATTTTTGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagattgtcctgcacaattattaaaagtcaatttatgtccttgtatggattttgtgtctaatgtttgcttg-atttttag

upper sequence: Vv06s0061g00770.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G19820.1 (Glycine max), 5'ss of exon 4
GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaatcagctcaaagttaagcaactattttgtttgtctttagtgacccat-gtctgatatgcatctatattgacag
|||||||||||||| || ||| | |||||||| |||||||||||||| |||||||||||||| || |||||||| |||||||| ||||| ||||||||||| |     || || |||   | |  |   | ||| | |   | ||  ||    | |||| || |     |   ||   ||
GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgttctgcacaattattaaaagtcaatttatgtccttgtatggattttttgtctaatgtttgcttgctttt-tag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351043093|gb|FQ451266.1|FQ451266
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349821779|gb|FQ408217.1|FQ408217
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|26258124|gb|CA809187.1|CA809187
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|351012777|gb|FQ430340.1|FQ430340
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|26258538|gb|CA809601.1|CA809601
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|26257065|gb|CA808128.1|CA808128
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349816214|gb|FQ403710.1|FQ403710
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349809399|gb|FQ411897.1|FQ411897
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349818014|gb|FQ408003.1|FQ408003
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAGAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349827458|gb|FQ422326.1|FQ422326
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349824659|gb|FQ413326.1|FQ413326
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGACCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349825958|gb|FQ415763.1|FQ415763
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349820988|gb|FQ404241.1|FQ404241
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|32250371|gb|CD716190.1|CD716190
EST:     GCTTTCAAGGTGACACGCATAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|351040587|gb|FQ438131.1|FQ438131
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|351029352|gb|FQ436746.1|FQ436746
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|28958827|gb|CB339413.1|CB339413
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349817273|gb|FQ405277.1|FQ405277
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|34320179|gb|CF372933.1|CF372933
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|351041640|gb|FQ455850.1|FQ455850
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349820586|gb|FQ404081.1|FQ404081
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349818183|gb|FQ408958.1|FQ408958
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|110710654|gb|EE086980.1|EE086980
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|351015950|gb|FQ431905.1|FQ431905
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|351027101|gb|FQ439962.1|FQ439962
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349807735|gb|FQ402126.1|FQ402126
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349825957|gb|FQ415762.1|FQ415762
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349815335|gb|FQ400490.1|FQ400490
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|351012803|gb|FQ430366.1|FQ430366
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349829711|gb|FQ421229.1|FQ421229
EST:     GCCTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|110379944|gb|EC945171.1|EC945171
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349808261|gb|FQ403448.1|FQ403448
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|351019772|gb|FQ439589.1|FQ439589
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|26257781|gb|CA808844.1|CA808844
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|110710470|gb|EE086833.1|EE086833
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|349830872|gb|FQ418132.1|FQ418132
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|110689228|gb|EE065270.1|EE065270
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|351028155|gb|FQ426056.1|FQ426056
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|351036245|gb|FQ464090.1|FQ464090
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
EST: gi|22007363|gb|BQ792397.1|BQ792397
EST:     GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG                         TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG
genomic: GCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaa ... atattgacagTGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAGgtaggttcaatcagctcaaagttaagcaactattttgtttgtctttagtgacccatgtctgatatgcatctatattgacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG