1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCCCAACTGGAGGAAATTGCACCTACATGGATGAATATTTCTTTGAGAATGAAAGATGATCCAGAGACAGATAAAGCTTTTGGATGGGTGCTAGAAATgtgagtagtaccttaaaatatttcatcttctgtcaggttctgtcagttgatggtgactgttctttggttttctgatatgaattttgatgtgtttccattttttctttgaaacaaag
species | Vitis vinifera |
transcript | Vv06s0009g03360.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAAGGATGATCCAGAAGACAGATAAAGCTTTTGGATGGGTGCTAGAAAT GTATGCATATGCTGTAGCATCTGCATTGCATGGTGTGCAGCATATCCTTCGEST: gi|110422611|gb|EC988938.1|EC988938
genomic: GAAA-GATGATCCAG-AGACAGATAAAGCTTTTGGATGGGTGCTAGAAATgtgagtagta ... tgaaacaaagGTATGCATATGCTGTAGCATCTGCATTGCATGGTGTGCAGCATATCCTTCG
EST: ATGAAAGATGATCCAGAGACAGATAAAGCTTTTGGATGGGTGCTAGAAAT GTATGCATATGCTGTAGCATCTGCATTGCATGGTGTGCAGCATATCCTTCG
genomic: ATGAAAGATGATCCAGAGACAGATAAAGCTTTTGGATGGGTGCTAGAAATgtgagtagta ... tgaaacaaagGTATGCATATGCTGTAGCATCTGCATTGCATGGTGTGCAGCATATCCTTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCAACTGGAGGAAATTGCACCTACATGGATGAATATTTCTTTGAGAATGAAAGATGATCCAGAGACAGATAAAGCTTTTGGATGGGTGCTAGAAATgtgagtagtaccttaaaatatttcatcttctgtcaggttctgtcagttgatggtgactgttctttggttttctgatatgaattttgatgtgtttccattttttctttgaaacaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG