1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAGgtaaaaactcttcctttttgatacgtgttattttcttcacccatttctttttgcctcattctggtttccaaaatcaaaatggtgcatcttaaactcgtgc...
species | Vitis vinifera |
transcript | Vv06s0009g01710.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAG GGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCTEST: gi|110388734|gb|EC953513.1|EC953513
genomic: ATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAGgtaaaaactc ... attgtcctagGGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCT
EST: AAGGTGATTACCTGGCTGTGAAGGGACCTAAG GGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCTEST: gi|110401612|gb|EC968227.1|EC968227
genomic: AAGGTGATTACCTGGCTGTGAAGGGACCTAAGgtaaaaactc ... attgtcctagGGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCT
EST: ATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAG GGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCTEST: gi|33406066|gb|CF211693.1|CF211693
genomic: ATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAGgtaaaaactc ... attgtcctagGGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCT
EST: ATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAG GGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCTEST: gi|33405978|gb|CF211605.1|CF211605
genomic: ATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAGgtaaaaactc ... attgtcctagGGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCT
EST: ATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAG GGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCTEST: gi|71864812|gb|DT013867.1|DT013867
genomic: ATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAGgtaaaaactc ... attgtcctagGGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCT
EST: ATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAG GGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCTEST: gi|110688836|gb|EE067844.1|EE067844
genomic: ATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAGgtaaaaactc ... attgtcctagGGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCT
EST: ATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAG GGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCTEST: gi|110718332|gb|EE095045.1|EE095045
genomic: ATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAGgtaaaaactc ... attgtcctagGGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCT
EST: ATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAG GGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCT
genomic: ATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAGgtaaaaactc ... attgtcctagGGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAGgtaaaaactcttcctttttgatacgtgttattttcttcacccatttctttttgcctcattctggtttccaaaatcaaaatggtgcatcttaaactcgtgc
- - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcaaa