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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGCTTAATGACAATCAGTTAACTGGTCAAATCCCAAGGGAACTTGTTGGTATATCAAGCCTCAAAATTGTgtaagtggttttgttcttatacttattttttagtgcatcagtgcttctatgatctgtttagttgtagtgcacttataatgtaaaaaatttgtgtattcag

Basic information

species Vitis vinifera
transcript Vv06s0009g01210.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g01210.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G815009_T01 (Zea mays), 5'ss of exon 4
ACGGCTTAATGACAATCAGTTAACTGGTCAAATCCCAAGGGAACTTGTTGGTATATCAAGCCTCAAAATTGTgtaagtggttttgttcttatacttattttttagtgcatcagtgcttctatgatctgtttagttgtagtgcactt-ataatgtaaaaaatttgtgtattcag
 ||||| |||| |||||| || ||||| |  |||||||||||||||  ||| ||||| || |||||| ||||||||||            ||| | | |||  | ||  | ||   ||||||  |||    | | ||  |  | || | ||| ||   |  |||    |||||
GCGGCTCAATGGCAATCATTTGACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaa----------ata-tcaatttcaaatgt-ttagca-ttctattctctccagattagtgctcaatttgacaatctacccaccttgctctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351041271|gb|FQ447398.1|FQ447398
EST:     ACTGGTCAAATCCCAAGGGAACTTGTTGGTATATCAAGCCTCAAAATTGT                         TGATGTTTCAAGCAACAACTTATGTGGAACAATTCCCACAACCGGACCCTT
genomic: ACTGGTCAAATCCCAAGGGAACTTGTTGGTATATCAAGCCTCAAAATTGTgtaagtggtt ... gtgtattcagTGATGTTTCAAGCAACAACTTATGTGGAACAATTCCAACAACCGGACCGTT
EST: gi|110726152|gb|EE101683.1|EE101683
EST:     ACTGGTCAAATCCCAAGGGAACTTGTTGGTATATCAAGCCTCAAAATTGT                         TGATGTTTCAAGCAACAACTTATGTGGAACAATTCCAACAACCGGACCGTT
genomic: ACTGGTCAAATCCCAAGGGAACTTGTTGGTATATCAAGCCTCAAAATTGTgtaagtggtt ... gtgtattcagTGATGTTTCAAGCAACAACTTATGTGGAACAATTCCAACAACCGGACCGTT
EST: gi|352790557|gb|FQ478196.1|FQ478196
EST:     ACTGGTCAAATCCCAAGGGAACTTGTTGGTATATCAAGCCTCAAAATTGT                         TGATGTTTCAAGCAACAACTTATGTGGAACAATTCCAACAACCGGACCGTT
genomic: ACTGGTCAAATCCCAAGGGAACTTGTTGGTATATCAAGCCTCAAAATTGTgtaagtggtt ... gtgtattcagTGATGTTTCAAGCAACAACTTATGTGGAACAATTCCAACAACCGGACCGTT