Sequence
atgc intronic sequence ATGC exonic sequenceGGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACATgtgagtttgctgtaaaaaggaaaaaaaaaaaaatgcagataaagagcttgaaacttcatttacatgattataatccaaaacattttttacattttttccttgcttacctttaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os05g36960.1 (Oryza sativa), 5'ss of exon 4
GGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACATgtgagtttgctgtaaaaaggaaaaaaaaaaaaatgcagataaagagcttgaaacttcatttacatgattataatccaaaacattttttacattttttccttgcttacctttaacag
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GGTTGCTATGTCTGCATTGTCACGGGCTATTGTGAAGGTGGAGATATgtgagt-----------------gagattatgttttagatta-gtttttcaaatgtcattttgtatattttgttgtatctcagttttctc-ttttatcacag--------------
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G137118_T02 (Zea mays), 5'ss of exon 5
GGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACATgtgagtttgctgtaaaaaggaaaaaaaaaaaaatgcagataaagagcttgaaacttcatttacatgattataatccaaaacattttttacattttttccttgcttacctttaacag
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GGTTGTTATGTCTGCATTGTCACGGGCTATTGTGAAGGTGGAGACATgtgagtgtgctttggc--ggtcatccttttagttgcaa----------cataaccacattta-gttatgagaacctttgtcttgtttttcag------------------------
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G074262_T01 (Zea mays), 5'ss of exon 5
GGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACATgtgagtttgctgtaaaaaggaaaaaaaaaaaaatgcagataaagagcttgaaacttcatttacatgattataatccaaaacattttttacattttttccttgcttacctttaacag
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GGCTGCTATGTTTGCATTGTGACGGGATACTGTGAAGGTGGCGATATgtgagt--gctgtg-------------------tgctgtttt-gaact---agcttttctaccgcctttgtgat--gactttttgtctaattgtattcctctttgacaattggcag
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G18340.1 (Glycine max), 5'ss of exon 4
GGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACATgtgagtttgctgtaaaaaggaaaaaaaaaaaaatgcagataaagagcttgaaacttcatttacatgattataatccaaaacattttttacattttttccttgcttacctttaacag------------
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GGTTGCTATGTCTGCATTGTCACTGGATACTGTGAAGGTGGAGACATgtgagtatatgataagacctatgaactagcagtgtcatgtggaagttcataaattttatatgcttaatc----tgcaacaggttatttataattttgttatacttattttctctacaatctgcaacag
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G31330.1 (Glycine max), 5'ss of exon 4
GGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACATgtgagtttgctg--taaaaaggaaaaaaaaaaaaatgcagataaagagcttgaaacttcatttacatgattataatc-caaaacatttt-ttacattttttccttgctt--acctttaacag
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GGTTGCTATGTTTGCATTGTTACTGGATACTGTGAAGGTGGAGACATgtgagtgtattggataatacctgtgaagtgtgaagtcctagtgtaatgtgaagttcatgggttgtgtatgtccaattacttactattttgttatgtttgttttctctttaaatacttaatag
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G09910.1 (Glycine max), 5'ss of exon 4
GGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACATgtgagtttgctgtaaaaaggaaaaaaaaaaaaatgcagataaagagcttgaaacttcatttacatgatt--------ataatccaaaacatt-ttttacattttttccttgcttacctttaacag
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GGTTGCTATGTCTGCATTGTCACCGGATACTGTGAAGGTGGAGACATgtgagtatatgataagacctatgaactagcagtgccatgtggaacttcataaattttatatgctcaatctgcaacaggttatttataattttgttatacttattttctctacaaatctgcaacag
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G38980.1 (Glycine max), 5'ss of exon 4
GGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACATgtgagtttgct--gtaaaaaggaaaaaaaaaaaaatgcagataaa---gagcttgaaacttcatttacat--gattataatccaaaacattttttacattttttccttgcttacctttaacag
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GGTTGTTATGTTTGCATTGTTACTGGATACTGTGAAGGTGGAGACATgtgagtgtatttgataatacttgtcaagtgtgaactccgactgcatgtgaagttcatgcgttgtgtaagtccaattacttactaatttttcatgtttgttttctctttaattac--ttaatag
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G44200.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACATgtgagtttg------ctgtaaaaaggaaaaaaaaaaaaatgcagataaagagcttgaaacttcatttacatgatt---ataatccaaaacattttttacattttttccttgcttacctttaacag
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GGTTGCTATGTTTGTATTGTCACTGGATACTGTGAAGGAGGAGACATgtgagttttaactttctctaaagattttgtagttaagttgtctttttttttttttgttgttttgttcacagaagtcaaagaatgtgttataaatcttttggtgttgtgatgggttttggttacag
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ32716 (Selaginella moellendorffii), 5'ss of exon 4
GGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACATgtgagtttgctgta--aaaaggaaaaaaaaaaaaatgcagataaagagcttgaaacttcatttacatgattataatccaaaacattttttacattttttccttgcttacctttaacag
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GGATGCTATGTTTGCATCGTTACTGGATATTGTGAAGGGGGTGATATgtaagtcatttgaaccgtaagagggtgctcctttacgtctctacagagcactaaaatgagtttgacttcttgccag------------------------------------------
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ20709 (Selaginella moellendorffii), 5'ss of exon 4
GGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACATgtgagtttgctgta--aaaaggaaaaaaaaaaaaatgcagataaagagcttgaaacttcatttacatgattataat--ccaaaacattttttacattttttccttgcttacctttaacag
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GGATGCTATGTTTGCATCGTTACTGGATATTGTGAAGGGGgtgatatgtaagtcatttgaaccgtaagagggtgctcctttacgtctctatagagcactaaaatgagtttgatttcttgccagggccgagatgatcagaagatccaacggaacgttctttcctgaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71862067|gb|DT011122.1|DT011122EST: GGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACAT GGCAGAATTGATGAAAAAATCGAATGGCGCCTACTTTCCTGAGGAG
genomic: GGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACATgtgagtttgc ... cctttaacagGGCAGAATTGATGAAAAAATCGAATGGCGCCTACTTTCCTGAGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTGCTATGTTTGCATTGTCACTGGATATTGTGAAGGAGGAGACATgtgagtttgctgtaaaaaggaaaaaaaaaaaaatgcagataaagagcttgaaacttcatttacatgattataatccaaaacattttttacattttttccttgcttacctttaacag
- - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - AGGAGA