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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGgtatattgtatttactggcaatggcatgcatgtttcagttcagcttgcattatggttttgtggtgggttgggatagttctcaagttccagccttgcctgttggggagtgctactgtgtgcctgaaataatttaattggattttttactttgcaaagaaacatctaactttttgcagtgcag

Basic information

species Vitis vinifera
transcript Vv06s0009g00410.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g00410.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G10030.1 (Glycine max), 5'ss of exon 5
CTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGgtatattgtatttactggcaatggcatgcatgtttcagttcagcttgcattatggttttgtggtgggttgggatagttctcaagttccagccttgcctgttggggagtgctactgtgtgcctgaaataatttaattggattttttactttgcaaagaaacatctaactttttgcagtgcag
|||||||||||| ||||| ||    |||||||| |||||||| ||||||||||| |||||||||||||  |||   |         || | | |    ||    ||   ||  |   ||||        |  || ||| |  |  ||| |      |   ||| |||                                                                           
CTATCCTAAGGACTCCGATAAGGTTATGCTTGCAAAACAAACTGGGCTTACTCGGAGCCAGgtatatttcattccata-------tatacctttaagggtgacactaatatgctatatttgcacatcaatttgaaagtcc--attttcgaatggatctcattgaggaaga------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32269618|gb|CD718777.1|CD718777
EST:     ATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACGCGAAGCCAG                         GTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT
genomic: ATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGgtatattgta ... tgcagtgcagGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT
EST: gi|32269940|gb|CD719099.1|CD719099
EST:     ATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACGCGAAGCCAG                         GTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT
genomic: ATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGgtatattgta ... tgcagtgcagGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT
EST: gi|110693884|gb|EE070506.1|EE070506
EST:     ATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACGCGAAGCCAG                         GTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAAGCCA-TGGG
genomic: ATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGgtatattgta ... tgcagtgcagGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAA-GCCAATGGT
EST: gi|32269627|gb|CD718786.1|CD718786
EST:     ATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACGCGAAGCCAG                         GTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT
genomic: ATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGgtatattgta ... tgcagtgcagGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT
EST: gi|71871047|gb|DT020102.1|DT020102
EST:     ATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACGCGAAGCCAG                         GTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT
genomic: ATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGgtatattgta ... tgcagtgcagGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT
EST: gi|32268362|gb|CD717521.1|CD717521
EST:     ATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACGCGAAGCCAG                         GTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT
genomic: ATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGgtatattgta ... tgcagtgcagGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT