1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTCTGAAGGGGTTGAAAATACCTTCTCTGGTATGAAAAAGAAGAAGAAGAAACCTgtatgtgggattggcattttcaattaacaatttgagttttgttaatagtgcatcttcagcagcaattgatatataattcttggagttattttgtag
species | Vitis vinifera |
transcript | Vv06s0004g08180.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGGGGTTGAAAATACCTTCTCTGGTATGAAAAAGAAGAAGAAGAAACCT GTAGAAACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGAATTGEST: gi|34548729|gb|CF516961.1|CF516961
genomic: AAGGGGTTGAAAATACCTTCTCTGGTATGAAAAAGAAGAAGAAGAAACCTgtatgtggga ... tattttgtagGTAGAAACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGATTTG
EST: GGTATGAAAAAGAAGAAGAAGAAACCT GTAGAAACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGAATTGEST: gi|26257846|gb|CA808909.1|CA808909
genomic: GGTATGAAAAAGAAGAAGAAGAAACCTgtatgtggga ... tattttgtagGTAGAAACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGATTTG
EST: CTGGTAGGAAAAAGGAAGAAGGAAGAAACCT GTAGAAAACTGATATTCTTAAATGACGGATGGTGGGGATGGGCAAGGAAGAEST: gi|34548647|gb|CF516879.1|CF516879
genomic: CTGGTATGAAAAA-GAAGAA-GAAGAAACCTgtatgtggga ... tattttgtagGTAG-AAACTGATA-TCTTAAATGAC-GATGGTGGGGAT-GGCAAGGAAGA
EST: TCTGGTATGAAAAAGAAGAAGAAGAAACCT GTAGAAACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGAATTGEST: gi|110363156|gb|EC926727.1|EC926727
genomic: TCTGGTATGAAAAAGAAGAAGAAGAAACCTgtatgtggga ... tattttgtagGTAGAAACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGATTTG
EST: AAGGGGTTGAAAATACCTTCTCTGGTATGAAAAAGAAGAAGAAGAAACCT GTAGAAACTGATATCTTAAATGATGATGGTGGGGATGGCAAGGAAGATTTG
genomic: AAGGGGTTGAAAATACCTTCTCTGGTATGAAAAAGAAGAAGAAGAAACCTgtatgtggga ... tattttgtagGTAGAAACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTGAAGGGGTTGAAAATACCTTCTCTGGTATGAAAAAGAAGAAGAAGAAACCTgtatgtgggattggcattttcaattaacaatttgagttttgttaatagtgcatcttcagcagcaattgatatataattcttggagttattttgtag
- - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - AAGAAA