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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTACTGTGTTTCTTGTGCAATTCATTCGCATGTTGTTAGGGTTCGTTCCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctatttttctttttcttttattattgttattattattattgttattattttgctatttttttctgtttaattactcgttaacggttgagaaatg...

Basic information

species Vitis vinifera
transcript Vv06s0004g07940.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G21370.1 (Glycine max), 5'ss of exon 4
GCAGTACTGTGTTTCTTGTGCAATTCATTCGCATGTTGTTAGGGTTCGTTCCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTT---TAGACGCCGGgtatgtctatttttctttttcttttattattgttattattattattgttattattttgctatttttttctgtttaattactcgttaacggttgagaaatg-----
   |||||||||||| ||||| || ||||| |||||||| |||||||| ||||||||||| || ||||||||||| || || | ||| ||    || ||| |||||   || ||| |     ||| ||  ||| |  |  | |     || ||| |    |  |  ||| | |  | ||    |   ||| ||  ||     |     
---GTACTGTGTTTCCTGTGCTATCCATTCTCATGTTGTGAGGGTTCGATCCCGCACTGATAGGAGGAAGCGTGAGCCTCCACAGCGATTCATCAGGCGCAGGgtaacactttttatagccatctctt--tatagcca--aatggagatgatat-agagagtgacatttatttactcaaaagtttagtaatggaagaatgtagagaat

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G18200.1 (Glycine max), 5'ss of exon 4
GCAGTACTGTGTTTCTTGTGCAATTCATTCGCATGTTGTTAGGGTTCGTTCCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTT---TAGACGCCGGgtatgtctatttttctttttcttttattattgttattattattattgttattattttgctatttttttctgtttaattactcgttaacggttgagaaatg-
   |||||||||||| ||||| || || || |||||||| |||||||| |||||||||||||| ||||||||||| || || | ||| ||    || ||| |||||   || ||| |     ||| |  || || || |   |   ||||    || ||||        || |||     ||||  |  ||||    | |    
---GTACTGTGTTTCCTGTGCTATCCACTCTCATGTTGTGAGGGTTCGATCCCGCACTGACAGGAGGAAGCGTGACCCTCCACAGCGATTCATCAGGCGCAGGgtaacactttttatagccatctctgtttttttttttggctga-attgaggatagtttggataaaacttgtgtaattgtactgatgcacggcaatggatcct

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 4
GCAGTACTGTGTTTCTTGTGCAATTCATTCGCATGTTGTTAGGGTTCGTTCCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTT---TAGACGCCGGgtatgtctatttttctttttcttttattat-tgttat--tattattatt-gttattattttgctatttttttctgtttaattactcgttaacggttgagaaatg
   |||||||||||||||||| || || || |||||||| |||||||| |||||||||||||| ||||| ||||| || || | | | ||    || ||| |||||   || | |  |  ||||| || || | || | |  | | ||  || |||  |   |||  |||  |||   |  | ||  | | |     |   |     
---GTACTGTGTTTCTTGTGCTATCCACTCTCATGTTGTGAGGGTTCGATCCCGCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacactttataaccgtttctgttgttttatgctgtgttttcatcgtttgttgctgaattgagattagtttggataaacttgtttgattgtactgatgc----

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G38950.1 (Glycine max), 5'ss of exon 4
GCAGTACTGTGTTTCTTGTGCAATTCATTCGCATGTTGTTAGGGTTCGTTCCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTT---TAGACGCCGGgtatgt-ctatttt---tctttttcttttattattgttattattattattgttattattttgct-atttttttctgtttaatta-ctcgttaacggttgagaaatg
   |||||||||||| ||||| || || || |||||||| |||||||| |||||||| ||||| ||||||||||| || || | | | ||    || ||| |||||    ||||| |     ||||| || | |||||| | |  |||   |   | ||  |    | |   |  | ||  |||| | || ||  ||   |        
---GTACTGTGTTTCCTGTGCTATCCACTCTCATGTTGTGAGGGTTCGATCCCGCACCGACAGGAGGAAGCGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaaacactattataaccatttttgttgttttattgctgtgtttacactgtgtgttgctgaattgaggatagtttggataataaacttgtatacttgtac------

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G39940.1 (Glycine max), 5'ss of exon 4
GCAGTACTGTGTTTCTTGTGCAATTCATTCGCATGTTGTTAGGGTTCGTTCCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTT---TAGACGCCGGgtatgtctatttttctttttcttttattattgttattattattattgttattattttgctatttttttctgttta-attactcgttaacggttgagaaatg---
   ||| |||||||| ||||| || || || |||||||| |||||||| ||||||||||| || || |||||||| || || | ||| ||    || ||| |||||  | ||| |   |   |||   |||||    ||  ||  ||   |  |||||||  |||| |||| ||| || || | || ||||   ||   ||||    
---GTATTGTGTTTCCTGTGCTATCCACTCTCATGTTGTGAGGGTTCGATCCCGCACTGATAGGAGAAAGCGTGAGCCTCCACAGCGATTCATCAGGCGCAGGgtaaatttatctgattgaatcta--attatctgaatcttt--taacttctttatttttatattcttttttgtgtacatcaatctttaaaaatttcaaaatcaaa

upper sequence: Vv06s0004g07940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G14950.1 (Glycine max), 5'ss of exon 4
GCAGTACTGTGTTTCTTGTGCAATTCATTCGCATGTTGTTAGGGTTCGTTCCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTA---GACGCCGGgtatgtctatttttctttttcttttattattgttattattattattgttattattttgctatttttttctgtttaattactcgttaacggttgagaaatg-----
   ||| |||||||| ||||| || || || |||||||| |||||||| ||||||||||| || || |||||||| || || | ||| ||||   ||||| |||||| | ||||    |   ||||  |||||    ||  ||   | |  ||| |||||  |||||||||       || | || ||||        ||||      
---GTATTGTGTTTCCTGTGCTATCCACTCTCATGTTGTGAGGGTTCGATCCCGCACTGATAGGAGAAAGCGTGAGCCTCCACAGCGATTTATCAGACGCAGGgtatatttattggattcaatctt--attatctgaatcttt--cacttctat-atttttatattttttttgtacacatgaatctttaaaaaaatcaaaatcaaagg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110402791|gb|EC963464.1|EC963464
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110396111|gb|EC961787.1|EC961787
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|30127855|gb|CB913194.1|CB913194
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|77583984|gb|DV221033.1|DV221033
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|161708810|gb|FC060895.1|FC060895
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|22010984|gb|BQ796018.1|BQ796018
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110368524|gb|EC932505.1|EC932505
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|27580824|gb|CB003519.1|CB003519
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTC
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTC
EST: gi|110426566|gb|EC992979.1|EC992979
EST:     CACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|87586799|gb|DY474928.1|DY474928
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110725555|gb|EE102188.1|EE102188
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110703804|gb|EE080969.1|EE080969
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|46917920|gb|CN547249.1|CN547249
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110716711|gb|EE091932.1|EE091932
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110725961|gb|EE102968.1|EE102968
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|349827973|gb|FQ422841.1|FQ422841
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|30296841|gb|CB973635.1|CB973635
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110729992|gb|EE106564.1|EE106564
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110387639|gb|EC952322.1|EC952322
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|34320245|gb|CF372999.1|CF372999
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110382458|gb|EC946749.1|EC946749
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTTTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110379594|gb|EC944803.1|EC944803
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|71867612|gb|DT016667.1|DT016667
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110412062|gb|EC977796.1|EC977796
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|37185071|gb|CF604424.1|CF604424
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110397683|gb|EC963502.1|EC963502
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|22008753|gb|BQ793787.1|BQ793787
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCCCCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110688461|gb|EE067037.1|EE067037
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110366612|gb|EC930524.1|EC930524
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110386545|gb|EC951146.1|EC951146
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|34415646|gb|CF414400.1|CF414400
EST:     CCCGCACTGACAGAAGGAAGCGTGATNCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110381094|gb|EC946410.1|EC946410
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110690877|gb|EE068339.1|EE068339
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|83277308|gb|DV941316.1|DV941316
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110701330|gb|EE078774.1|EE078774
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|71869821|gb|DT018876.1|DT018876
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|77587578|gb|DV222954.1|DV222954
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110701297|gb|EE078703.1|EE078703
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110714403|gb|EE091268.1|EE091268
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|87586382|gb|DY474670.1|DY474670
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|27580159|gb|CB002854.1|CB002854
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|37188237|gb|CF607586.1|CF607586
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|32247086|gb|CD712905.1|CD712905
EST:     ACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: ACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110396512|gb|EC962202.1|EC962202
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110689564|gb|EE065900.1|EE065900
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110369266|gb|EC933420.1|EC933420
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110385038|gb|EC949521.1|EC949521
EST:     CCCGCACTGACAGAAGGAAGGGTGATCCACCTTTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|77586811|gb|DV222547.1|DV222547
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110367394|gb|EC931326.1|EC931326
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110706523|gb|EE082123.1|EE082123
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|30296917|gb|CB973711.1|CB973711
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
EST: gi|110730170|gb|EE106942.1|EE106942
EST:     CCCGCACTGACAGAAGGAAGCGTGATCCACCTCAGCGCTTTAGACGCCGG                         GATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT
genomic: CCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctat ... tgcatgacagGATGACATGCCAAAACCAGGTCAAGCACCTCGCCCTGCTGGTGCAGCTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGTACTGTGTTTCTTGTGCAATTCATTCGCATGTTGTTAGGGTTCGTTCCCGCACTGACAGAAGGAAGCGTGATCCACCTCTGCGCTTTAGACGCCGGgtatgtctatttttctttttcttttattattgttattattattattgttattattttgctatttttttctgtttaattactcgttaacggttgagaaatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagaaa