Sequence
atgc intronic sequence ATGC exonic sequenceGATCAAGAACATTAGAAGGCGAATGACACCACAACCATTAAAAATCCGTGCTGACATAGAAATGAAATGTTTCCAGTTTGATGGTGTTCTTCACATCAAGgtattgattgttcttccggtaccattatttctttatctttgtaagttttgtggaagatggggcacaaccatgctgtgtttgcatgagactgtgtcaatgg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g07100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g18510.1 (Oryza sativa), 5'ss of exon 2
GATCAAGAACATTAGAAGGCGAATGACACCACAACCATTAAAAATCCGTGCTGACATAGAAATGAAATGTTTCCAGTTTGATGGTGTTCTTCACATCAAGgtattgattgttcttccggtaccattatttctttatctttgtaagttttgtggaagatggggcacaaccatgctgtgtttgcatgagactgtgtcaatgg
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AGTTAAGAATATAAGGAGGAGGATGACACCACAGCCACTTAAGATCCGTGCTGATGTTGAGATGAAATGTTTCCAATTTGATGGGGTGCTTCACATTAAGgttct---tgttatccctgtgtcttcccttagggtttactgaaactttttct-----tatggctaattctggttggttttgcag----------------
upper sequence: Vv06s0004g07100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G083262_T02 (Zea mays), 5'ss of exon 2
GATCAAGAACATTAGAAGGCGAATGACACCACAACCATTAAAAATCCGTGCTGACATAGAAATGAAATGTTTCCAGTTTGATGGTGTTCTTCACATCAAGgtattgattgttcttc-cggtaccattatttctttatctttgtaagttttgtggaagatggggcacaaccatgc-tgtgtttgcatgagactgtgtcaatgg
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GGTTAAGAACATAAGGAGGAGGATGACACCACAGCCTCTCAAGATCCGTGCTGATATAGAGATGAAATGCTTCCAGTTTGATGGAGTGCTCCATATTAAGgttctagttgcccctaatgccacccttgtgatttaacaatggta---tttgcaaaaaac------taattgtatatgtatttgcag----------------
upper sequence: Vv06s0004g07100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G058138_T01 (Zea mays), 5'ss of exon 2
GATCAAGAACATTAGAAGGCGAATGACACCACAACCATTAAAAATCCGTGCTGACATAGAAATGAAATGTTTCCAGTTTGATGGTGTTCTTCACATCAAGgtattgattgttctt-ccggtaccattatttctttatctttgtaagttttgtggaagatggggcacaaccatg-ctgtgtttgcatgagactgtgtcaatgg
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GGTGAAGAACATAAGGAGGAGGATGACACCGCAGCCACTCAAGATCCGTGCTGATATAGAGATGAAGTGCTTCCAGTTTGATGGAGTGCTCCATATTAAGgttctagttggccctgttggtgtccttgtgatttgacaatggta---tttgcaaaaact-------aattgtatctgtatttgcag----------------
upper sequence: Vv06s0004g07100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G35600.1 (Glycine max), 5'ss of exon 4
GATCAAGAACATTAGAAGGCGAATGACACCACAACCATTAAAAATCCGTGCTGACATAGAAATGAAATGTTTCCAGTTTGATGGTGTTCTTCACATCAAGgtattgattgtt------cttccggt-----accattatttctttatctttgtaagttt--tgtggaagatggggcacaac--catgctgtgtttgcatgagactgtgtcaatgg-----------------------
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TGTGAAGAATATTAGAAGACGAATGACCCCCCAACCCTTGAAAATTAGGGCAGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTCTTCACATTAAGgtcttgattatttctattcctcctgtttcttattttggcttcttttcttttaagcatctaatttgttatgtgaagtgttatttcctatagcttatcttccaaagtattctcacgttttataatgatttgattatgcag
upper sequence: Vv06s0004g07100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G02820.1 (Glycine max), 5'ss of exon 4
GATCAAGAACATTAGAAGGCGAATGACACCACAACCATTAAAAATCCGTGCTGACATAGAAATGAAATGTTTCCAGTTTGATGGTGTTCTTCACATCAAGgtatt-gattgtt-------cttccggt----accattatttctttatctttgtaagttt--tgtggaagatggggcacaaccatgctgtgtttgcatgagactgtgtcaatgg-------------------------
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TGTGAAGAATATTAGAAGACGAATGACCCCCCAACCCTTGAAAATTAGGGCAGATATTGAAATGAAATGTTTTCAATTTGATGGAGTTCTTCACATTAAGgtatttgattatttgtattccttttgttttttactttggttccttttcttttaagcatctaatttgttatatgaatttttattgcctatagcttatcttccaaagtattctcaggttttataatgatttgattatgcag
upper sequence: Vv06s0004g07100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G40290.1 (Arabidopsis thaliana), 5'ss of exon 4
GATCAAGAACATTAGAAGGCGAATGACACCACAACCATTAAAAATCCGTGCTGACATAGAAATGAAATGTTTCCAGTTTGATGGTGTTCTTCACATCAAGgtattgattgttcttccggtaccattatttctttatctttgtaagttttgtggaagatggg---gcacaaccatgct-gtgtttgcatgagactgtgtcaatgg
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TGTGAAGAACATTAGGAGGAGAATGACACCACAACCAATGAAAATCCGGGCTGATATCGAATTGAAGTGTTTTCAGTTTGATGGAGTTGTTCACATTAAGgtcgtatctcttattagattatctttaacttgtgaaatgaatacattatgatttcatttgattttctcacccatgcttgtaatttcag----------------
upper sequence: Vv06s0004g07100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G05470.1 (Arabidopsis thaliana), 5'ss of exon 4
GATCAAGAACATTAGAAGGCGAATGACACCACAACCATTAAAAATCCGTGCTGACATAGAAATGAAATGTTTCCAGTTTGATGGTGTTCTTCACATCAAGgtattgattgttcttccggtaccattatttctttatctttgtaagttttgtggaagatggggcacaaccatgctgtgtttgcatgagactgtg--tcaatgg
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TTTGAAGGACATTAGGAGGAGAATGACACCACAGCCAATGAAGATTCGTGCTGATATTGAATTGAAGTGTTTTCAGTTTGATGGAGTTCTCCACATCAAGgtcagtcttttcctttt--tcttatctgttttttttttttgttttctctgtttgttttctacttctagctaaagatgtttggctattattatgaatttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|83274833|gb|DV938929.1|DV938929EST: CTGACATAGAAATGAAATGTTTCCAGTTTGATGGTGTTCTTCACATCAAG GAAGCTATGCGTAAAGCTGAAGCTGCCGGCAATAAGGACTGCCCTGTGAAA
genomic: CTGACATAGAAATGAAATGTTTCCAGTTTGATGGTGTTCTTCACATCAAGgtattgattg ... tattatgcagGAAGCTATGCGTAAAGCTGAAGCTGCCGGCAATAAAGACTGCCCTGTGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATCAAGAACATTAGAAGGCGAATGACACCACAACCATTAAAAATCCGTGCTGACATAGAAATGAAATGTTTCCAGTTTGATGGTGTTCTTCACATCAAGgtattgattgttcttccggtaccattatttctttatctttgtaagttttgtggaagatggggcacaaccatgctgtgtttgcatgagactgtgtcaatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaagat