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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAATCAGCCACAGAACTCACCATCAGAACCAAGGTCATGTTGAAAATGATGAATCATGGGTTCCAgtaagatggtttattctcttcatttggccatttcaatatcatagactcttttccatatttctaatgtcataaacttatgttcag

Basic information

species Vitis vinifera
transcript Vv06s0004g06720.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os12g01370.1 (Oryza sativa), 5'ss of exon 3
GAGAATCAGCCACAGAACTCACCATCAGAACCAAGGTCATGTTGAAAATGATGAATCATGGGTTCCAgtaagatggtttattctcttcatttggccatttcaatatcatagactcttttccatatttctaatgtcataaacttatgttcag------------------------
|||||||||||||||||| |||||||||||||| |||||| | || || || || || |||   || ||  |     | | || |||||  |  ||   ||  | | |   | |  ||  ||| | ||     || || | ||   | ||                         
GAGAATCAGCCACAGAACACACCATCAGAACCACGGTCATATCGAGAAGGACGAGTCCTGGCACCCGgtttg-----tcactc-cttcagatcacctcctc--tcttactaatttcttctcatctctcgcccatcctacaattgcttgcacttctcaacttcattccactcctag

upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os11g01340.2 (Oryza sativa), 5'ss of exon 3
GAGAATCAGCCACAGAACTCACCATCAGAACCAAGGTCATGTTGAAAATGATGAATCATGGGTTCCAgtaagatggtttattctcttcatttggccatttcaata-tcatagactcttttccatatttctaatg-------tcataaacttatgttcag---------
||| |||||||||||||| |||||||||||||| |||||| | || |  || || || |||   || ||  | |   |  ||||  |||  |   |  || | |  |  |   ||||   ||||  | | | ||       |  | ||||||  | ||          
GAGGATCAGCCACAGAACACACCATCAGAACCACGGTCATATCGAGAGGGACGAGTCCTGGCACCCGgtttg-tcactccttctgatcacctcctctcttaatttcttctcatctctcgcccatcctacaattgcttgcacttctcaacttaattccactcctagtac

upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G354558_T01 (Zea mays), 5'ss of exon 3
GAGAATCAGCCACAGAACTCACCATCAGAACCAAGGTCATGTTGAAAATGATGAATCATGGGTTCCAgtaagatggtttattctcttcatttggccatttcaatatcatagactcttttccatatt---tctaatgtcataaacttatgttcag--------------------------
||| |||||||||||||| |||||||||||||| || ||  |  | |  || || ||||||   || || |||   |  | |||    || |  |  | | | |||  |  |||   |   | ||    |  ||| | ||  |  |  | |                             
GAGGATCAGCCACAGAACACACCATCAGAACCACGGCCACATCCACAGGGACGAGTCATGGCACCCGgtcagacactcaaatctacctatctatctctat-actatagtgtactacatctgaaataggattcaatctgatcgagctgagctttcttgttgttggcatgcatgcatgccag

upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G27190.1 (Glycine max), 5'ss of exon 3
GAGAATCAGCCACAGAACTCACCATCAGAACCAAGGTCATGTTGAAAATGATGAATCATGGGTTCCAgtaagatggtttattctcttcatttggccatttcaatatcatagactcttttccatatttctaatgtcataaacttatgttcag-----------------------------------------------------------------------------------------
|||||| |||||||| ||||||||||||||||| || |||||||| || ||||||||||||||||| |||  ||  |   ||  ||| |||     ||||||| ||  |    |||| ||   ||||  |     |   | |||  ||                                                                                            
GAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCGgtattattatcagtttgcttaatta----atttcaacatttttctttcttctcttaattttaatcagtagttaattagatttgattgtgttccaatagaagaaaaagggtaatctagagatgtgaacttcatgaagtggttcatgattatgtgcctttatgactttatgtcag

upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G06950.1 (Glycine max), 5'ss of exon 3
-GAGAATCAGCCACAGAACTCACCATCAGAACCAAGGTCATGTTGAAAATGATGAATCATGGGTTCCAgtaagatggtttattctcttcatttggccatttcaatatcatagactcttttccatatttctaat--gtcataaacttatgttcag-------------------------------------------------------------------------------------
 |||||| |||||||| ||||||||||||||||| || |||||||| || ||||||||||||||||| |||  |   |   ||  ||| |||     ||||| | ||  |      || | | || || ||||  ||  | |  ||  |||  |                                                                                     
GGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCggtattactatgagtttgcttgatta----atttccacattttt--tctttcttcttaattttaatcagtggttagatttggttgtgttccaatagaagaaaagggggtatctagagagatgtgaatttcatgaagtggttcatgattatgtgtctttatgcctttatgtca

upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G39230.1 (Glycine max), 5'ss of exon 3
GAGAATCAGCCACAGAACTCACCATCAGAACCAAGGTCATGTTGAAAATGATGAATCATGGGTTCCAgtaagatggtttatt-ctcttcatttggccat------ttcaatatcatagactcttttccatatttctaatgtcataaacttatgttcag-----------------------------------------------------
|||||| |||||||||||||||||||| ||||| || ||  |||| || ||||| ||||||||||||||| | || || ||| ||  || | | |   |      ||||||  |||    | | ||   ||  || || |  | ||    || || |                                                      
GAGAATTAGCCACAGAACTCACCATCAAAACCATGGACACATTGAGAAGGATGAGTCATGGGTTCCAgtatg-tgattaattgcttctcctatagttgttcttgattcaattacattttatttatttggtaggtccaa-gaaaaaagggaatctttatgcttcctgaggctgttcttgaacatggctcttttttatgtgtcattatcttag

upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G37350.2 (Glycine max), 5'ss of exon 3
GAGAATCAGCCACAGAACTCACCATCAGAACCAAGGTCATGTTGAAAATGATGAATCATGGGTTCCAgtaagatggtttatt-ctcttcatttggccatttcaatatca--tagactctt---ttccatatttctaatgtcataaa----cttatg-ttcag-----------------------------------------
|||||| |||||||||||||||||||| || || || ||  |||| || |||||||| |||||||||||| | || || | | ||     | | |  ||||     |||  || | |  |   ||  |||  |  ||    | |       ||||  |||||                                         
GAGAATTAGCCACAGAACTCACCATCAAAATCATGGACACATTGAGAAGGATGAATCCTGGGTTCCAgtatg-tgattaactacttcctctatagttatttttgattcaattaaatttatttatttaataagttcaagaaaaaaggaatctttatacttcagataaagctgttcttgaacatttttttttgtcattatcttag

upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G29980.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGAATCAGCCACAGAACTCACCATCAGAACCAAGGTCATGTTGAAAATGATGAATCATGGGTTCCAgtaagatggtttattctcttca------tttggccatttcaatatcatagactcttttcc-----atatttctaatgtcataaacttatgttcag-----
|||||| |||||| | || ||||| |||||||| || ||||||||||| || || ||||||||||| ||||  |       |||| |||      | | | | |||  || | |||     ||| ||     ||| ||   |||    ||||   |    |      
GAGAATAAGCCACCGGACACACCACCAGAACCATGGCCATGTTGAAAACGACGAGTCATGGGTTCCGgtaatctttccctctctcatcagtgtactcttgtctttttcattttatatttattttcccgtcgaataatttatatgcttaaaacacttagaaaattcta