1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTTGTAAAAGTTCGGCTTCAAGCTGAAGGAAAATTGCCACCTGGGGTTCCAAGGCGTTACACTGGAGCTTTGGATGCTTATTATACAATAGTGAGACAGgtcatttttctaaaatgcaatgtgtcgattaaattttttcatcatgttctaaattcatttggaaacatag
species | Vitis vinifera |
transcript | Vv06s0004g05940.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAGGCGTTACACTGGAACTTTGGATGCTTATTATACAATAGTGAGACAG GAAGGCCTAGCEST: gi|349814387|gb|FQ398827.1|FQ398827
genomic: CAAGGCGTTACACTGGAGCTTTGGATGCTTATTATACAATAGTGAGACAGgtcatttttc ... ggaaacatagGAAGGCCTAGC
EST: CAAGGCGTTACACTGGAGCTTTGGATGCTTATTATACAATAGTGAGACAG GAAGGCCTAGCAGCTCTATGGACGGGGCTTGGCCCTAATATTGCCCGGAATEST: gi|352793820|gb|FQ481974.1|FQ481974
genomic: CAAGGCGTTACACTGGAGCTTTGGATGCTTATTATACAATAGTGAGACAGgtcatttttc ... ggaaacatagGAAGGCCTAGCAGCTCTATGGACGGGGCTTGGCCCTAATATTGCCCGGAAT
EST: CAAGGCGTTACACTGGAGCTTTGGATGCTTATTATACAATAGTGAGACAG GAAGGCCTAGCEST: gi|351051586|gb|FQ450138.1|FQ450138
genomic: CAAGGCGTTACACTGGAGCTTTGGATGCTTATTATACAATAGTGAGACAGgtcatttttc ... ggaaacatagGAAGGCCTAGC
EST: CAAGGCGTTACACTGGAGCTTTGGATGCTTATTATACAATAGTGAGACAG GAAGGCCTAGC---T--ATGGACGGGGCTTGGCCCTAATATTGCCCGGAATEST: gi|349821879|gb|FQ413050.1|FQ413050
genomic: CAAGGCGTTACACTGGAGCTTTGGATGCTTATTATACAATAGTGAGACAGgtcatttttc ... ggaaacatagGAAGGCCTAGCAGCTCTATGGACGGGGCTTGGCCCTAATATTGCCCGGAAT
EST: CAAGGCGTTACACTGGAGCTTTGGATGCTTATTATACAATAGTGAGACAG GAAGGCCTAGCAGCTCTATGGACGGGGCTTGGCCCTAATATTGCCCGGAATEST: gi|351054855|gb|FQ462885.1|FQ462885
genomic: CAAGGCGTTACACTGGAGCTTTGGATGCTTATTATACAATAGTGAGACAGgtcatttttc ... ggaaacatagGAAGGCCTAGCAGCTCTATGGACGGGGCTTGGCCCTAATATTGCCCGGAAT
EST: CAAGGCGTTACACTGGAGCTTTGGATGCTTATTATACAATAGTGAGACAG GAAGGCCTAGC---T--ATGGACGGGGCTTGGCCCTAATATTGCCCGGAAT
genomic: CAAGGCGTTACACTGGAGCTTTGGATGCTTATTATACAATAGTGAGACAGgtcatttttc ... ggaaacatagGAAGGCCTAGCAGCTCTATGGACGGGGCTTGGCCCTAATATTGCCCGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTGTAAAAGTTCGGCTTCAAGCTGAAGGAAAATTGCCACCTGGGGTTCCAAGGCGTTACACTGGAGCTTTGGATGCTTATTATACAATAGTGAGACAGgtcatttttctaaaatgcaatgtgtcgattaaattttttcatcatgttctaaattcatttggaaacatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT