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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGTGGCTCTTTATTTGGCACAAGCTTTGGAATACTGCAGTAGTAAAGGGCGGGCATTGTACCATGACCTGAATGCTTACAGAGTTTTGTTTGATCAGgtactttcaccgttttcactgtcatgtttattgaccttttcagtttgttattttttagtttttttagtctactcatggtgaatcaacattttacag

Basic information

species Vitis vinifera
transcript Vv06s0004g05810.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G41600.1 (Glycine max), 5'ss of exon 4
GAGAGTGGCTCTTTATTTGGCACAAGCTTTGGAATACTGCAGTAGTAAAGGGCGGGCATTGTACCATGACCTGAATGCTTACAGAGTTTTGTTTGATCAGgtactttcaccgttttcact-gtcatgtttattgaccttttcagtttgttattttttagtttttttagtctactcatggtgaatcaacattttacag
|||||||||  | ||||| |||||||| ||||| |||||||| ||||||||  |||||||||| ||||| || ||||||||  |||||||||||||||||||||||   |  || | ||  | |  | ||||   || ||    ||| ||||   || ||||   | || | |  |||||| |              
GAGAGTGGCCTTGTATTTAGCACAAGCATTGGAGTACTGCAGCAGTAAAGGAAGGGCATTGTATCATGATCTTAATGCTTATCGAGTTTTGTTTGATCAGgtacttaagcttttatgaccaggccagcttat--gccgttatgttttattatccctt-gtttacatggtat-ccaatggtggacag-----------

upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G06200.1 (Glycine max), 5'ss of exon 4
GAGAGTGGCTCTTTATTTGGCACAAGCTTTGGAATACTGCAGTAGTAAAGGGCGGGCATTGTACCATGACCTGAATGCTTACAGAGTTTTGTTTGATCAGgtactttcaccgttttcactgtcatgtttattgaccttttcagtttgttattttttagtttttttagtctactcatggtgaatcaacattttacag
||| |||||  | ||||| || ||||| |||||||||||||| |||||||   |||||||||||||||| || ||||| || ||| ||||||||||||||||| ||   |  |||| ||     |||||  || |  |||||  ||||  ||| | |  || ||| ||  ||  |||||| |              
GAGGGTGGCCTTGTATTTAGCTCAAGCATTGGAATACTGCAGCAGTAAAGAAAGGGCATTGTACCATGATCTTAATGCATATAGAATTTTGTTTGATCAGgtatttcagc--ttttaacc----tgttttgtgcctctttca--ttgtattttgtcaacttatttggt--accaatggtggacag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30299737|gb|CB976531.1|CB976531
EST:     GGCGGGCATTGTACCATGACCTGAATGCTTACAGAGTTTTGTTTGATCAG                         GATGGTAATCCCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGCAGAGAT
genomic: GGCGGGCATTGTACCATGACCTGAATGCTTACAGAGTTTTGTTTGATCAGgtactttcac ... cattttacagGATGGTAATCCCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGCAGAGAT