1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCAAGAAAGACGAAGATGATCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAGgtataattattctaagtgaagataaaatagcaactcagtgaagcgacagcagtggagtgtactaatatcttgaacctctgcctgtgtttctgcag
species | Vitis vinifera |
transcript | Vv06s0004g05650.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAG GGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACATEST: gi|27581890|gb|CB004585.1|CB004585
genomic: TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAGgtataattat ... gtttctgcagGGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT
EST: TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAG GGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACATEST: gi|161711076|gb|FC061140.1|FC061140
genomic: TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAGgtataattat ... gtttctgcagGGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT
EST: TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAG GGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACATEST: gi|22010822|gb|BQ795856.1|BQ795856
genomic: TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAGgtataattat ... gtttctgcagGGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT
EST: TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAG GGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACATEST: gi|110367570|gb|EC931509.1|EC931509
genomic: TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAGgtataattat ... gtttctgcagGGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT
EST: TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAG GGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT
genomic: TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAGgtataattat ... gtttctgcagGGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAAGAAAGACGAAGATGATCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAGgtataattattctaagtgaagataaaatagcaactcagtgaagcgacagcagtggagtgtactaatatcttgaacctctgcctgtgtttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG