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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTTGCGTATGCCACCATCAATAGCTTTTGCAACTAGAGGGCGATTACAAGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGGgtatggtcaagtcaattattgtgcaacatatgccatgcttcaaacttgaagttgaattcgtgcatttctttagaaattatcagaaggttctagctgaggtttattttgaaattgcacttatcatgaattattcattctgccacag

Basic information

species Vitis vinifera
transcript Vv06s0004g05080.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110384453|gb|EC948891.1|EC948891
EST:     AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGG                         ATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCAC
genomic: AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGGgtatggtcaa ... tctgccacagATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCAC
EST: gi|110400098|gb|EC966641.1|EC966641
EST:     AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGG                         ATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCAC
genomic: AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGGgtatggtcaa ... tctgccacagATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCAC
EST: gi|34543939|gb|CF512171.1|CF512171
EST:     AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGG                         ATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCAC
genomic: AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGGgtatggtcaa ... tctgccacagATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCAC
EST: gi|110402228|gb|EC959605.1|EC959605
EST:     AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGG                         ATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCAC
genomic: AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGGgtatggtcaa ... tctgccacagATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCAC