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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttacagtctatcatctttaattttattatgtggatcatgaatttatgatatttctatatggagttggttgtaaggcattttaaaaatgaatttt...

Basic information

species Vitis vinifera
transcript Vv06s0004g04460.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G14960.1 (Glycine max), 5'ss of exon 4
GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttacagtctatcatctttaattttattatgtggatcatgaatttatgatatttctatatggagttggttgtaaggcattttaaaaatgaatttt-----
|||||||||||||| ||||| ||  |||| |||  ||| ||||||||||| || ||||||||||| |||    | |||  | ||   |||     | |  ||||    ||    ||| |  ||    |||       | | ||    |||| |    |  |     
GAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCATTGGCAGgtactttttgtctttattttgttggttttccagttcttaatcaacggttctgtataataataccctgagaca----tgaagc-caataaacaccggtcctgtgta

upper sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G28800.4 (Arabidopsis thaliana), 5'ss of exon 4
GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttacagtctatcatctttaattttattatgtggatcatgaattt--atgatatttctatatgga-gttggttgtaaggcattttaaaaatgaatttt
|| || |||||||| |||||||||||  | ||||| |||||||| |||||||| ||||||||||| ||     | ||  |  |   | |||  |||     || ||||||    ||| || |  | ||    |||  || || |  |  ||    |  || |||
GAGAGGATACAACTAGAGACATCGCGATTGTATAAACAAGCTGGTGTTAATCCGTTGGCAGgtactttct---tttagaagttacgagttttgtattcccttcctgaattgtggtgacatatgcacattattgttttttttatgttaggttgcttaccaacttt

upper sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G28800.1 (Arabidopsis thaliana), 5'ss of exon 4
GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttacagtctatcatctttaattttattatgtggatcatgaatttatgatatttctatatggagttggttgtaaggcattttaaaaatgaatttt
|| || |||||||| |||||||||||  | ||||| |||||||| |||||||| ||||||||||| ||     | ||  |  |   | |||  |||     || ||||||   |  |  | |  |     ||| || |     || |||            
GAGAGGATACAACTAGAGACATCGCGATTGTATAAACAAGCTGGTGTTAATCCGTTGGCAGgtactttct---tttagaagttacgagttttgtattcccttcctgaattgtggtgacatatgcacattattgttttttt--tatgttag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349814872|gb|FQ410095.1|FQ410095
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351048056|gb|FQ441228.1|FQ441228
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351038970|gb|FQ457645.1|FQ457645
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349821185|gb|FQ408772.1|FQ408772
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351053570|gb|FQ462645.1|FQ462645
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCCGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351035254|gb|FQ458611.1|FQ458611
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349808994|gb|FQ407443.1|FQ407443
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351037204|gb|FQ457037.1|FQ457037
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349809519|gb|FQ414409.1|FQ414409
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349822872|gb|FQ398259.1|FQ398259
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349824427|gb|FQ417814.1|FQ417814
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349817462|gb|FQ407252.1|FQ407252
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349825681|gb|FQ421780.1|FQ421780
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349815532|gb|FQ400688.1|FQ400688
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349832322|gb|FQ420883.1|FQ420883
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351042878|gb|FQ451172.1|FQ451172
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349829872|gb|FQ422185.1|FQ422185
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349809169|gb|FQ398942.1|FQ398942
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349815709|gb|FQ400865.1|FQ400865
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCCCAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351053158|gb|FQ455615.1|FQ455615
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349816846|gb|FQ399714.1|FQ399714
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCCGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|352790292|gb|FQ481491.1|FQ481491
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351022475|gb|FQ446997.1|FQ446997
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|110373005|gb|EC937208.1|EC937208
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|18458571|gb|BM436849.1|BM436849
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349808495|gb|FQ405639.1|FQ405639
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351052838|gb|FQ456566.1|FQ456566
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351024245|gb|FQ423668.1|FQ423668
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTTCCAACTTTGGCCACAATACCAGCCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351033979|gb|FQ463034.1|FQ463034
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349823559|gb|FQ414969.1|FQ414969
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|110711190|gb|EE087433.1|EE087433
EST:     ACTGGAGACATCGCGGCTTTATAAGCNAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349819385|gb|FQ412279.1|FQ412279
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|30327231|gb|CD010493.1|CD010493
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351025288|gb|FQ434301.1|FQ434301
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTCCCCA-CTTTGGCCACAATACCAGTCTGGATAGG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGG
EST: gi|32269560|gb|CD718719.1|CD718719
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349813816|gb|FQ414050.1|FQ414050
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCANG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|110394254|gb|EC958925.1|EC958925
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351037566|gb|FQ462549.1|FQ462549
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351025464|gb|FQ435156.1|FQ435156
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCAACA-TACCAGTCTGGATAGGTTT-TGATCA
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCA-CAATACCAGTCTGGATAGGTTTGT-ATCA
EST: gi|352799049|gb|FQ480898.1|FQ480898
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|352791382|gb|FQ480961.1|FQ480961
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351019788|gb|FQ439605.1|FQ439605
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCTCAACTTTGGCCACAATACCAGTCTGGGA-AGGTTTGTATCAA
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGG-ATAGGTTTGTATCAA
EST: gi|351027277|gb|FQ444526.1|FQ444526
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|352786390|gb|FQ478999.1|FQ478999
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTG
EST: gi|351038919|gb|FQ457594.1|FQ457594
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|110374436|gb|EC939192.1|EC939192
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|351053162|gb|FQ455619.1|FQ455619
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCGG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|27585311|gb|CB008006.1|CB008006
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|33402160|gb|CF207787.1|CF207787
EST:     ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
genomic: ACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAG
EST: gi|349815482|gb|FQ400638.1|FQ400638
EST:     CTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGGTTAATCCTTTGGCAG                         GATGTTTCCCAACTTTGGCCACA-TAACC-GTTCTGAA-AGGTTTGTATCA
genomic: CTGGAGACATCGCGGCTTTATAAGCAAGCTGGGG-TTAATCCTTTGGCAGgtacgtttac ... atgtgaacagGATGTTTCCCAACTTTGGCCACAATA-CCAGT-CTGGATAGGTTTGTATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAGAATACAACTGGAGACATCGCGGCTTTATAAGCAAGCTGGGGTTAATCCTTTGGCAGgtacgtttacagtctatcatctttaattttattatgtggatcatgaatttatgatatttctatatggagttggttgtaaggcattttaaaaatgaatttt

- - - - - -  TGGAGA
- - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaatg