1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTCAGCTGCACTGGTTGTTGGTGGTATCCTTGGCCTCATCCAAGCCATATTTCTCATTTCTGGAGCAAAACCTATATTGAACTTCATGGGAGTCCATTCTgtaagtagtaccttagttatggaaacaagaaaaacctcttcaaatttactttttttcgtctcatttagtccctagatttgtaacccatgattcagtgaagggctgttttttttcatatag
species | Vitis vinifera |
transcript | Vv06s0004g02140.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCTCATTTCTGGAGCAAAACCTATATTGAACTTCATGGGAGTCCATTCT GATTCCCCTATGCTAGCCCCAGCACAAGAATACTTGACTCTGAGATCACTTEST: gi|110722935|gb|EE099669.1|EE099669
genomic: TTCTCATTTCTGGAGCAAAACCTATATTGAACTTCATGGGAGTCCATTCTgtaagtagta ... tttcatatagGATTCCCCTATGCTAGCCCCAGCACAAGAATACTTGACTCTGAGATCACTT
EST: TTCTCATTTCTGGAGCAAA-CCTATATTGAACTTCATGGGAGTCCATTCT GATTCCCCTATGCTAGCCCCAGCACAAGA-TACTTGACTCTGAGATCACTTEST: gi|30300493|gb|CB977287.1|CB977287
genomic: TTCTCATTTCTGGAGCAAAACCTATATTGAACTTCATGGGAGTCCATTCTgtaagtagta ... tttcatatagGATTCCCCTATGCTAGCCCCAGCACAAGAATACTTGACTCTGAGATCACTT
EST: TTCTCATTTCTGGAGCAAAACCTATATTGAACTTCATGGGAGTCCATTCT GACTCCCCTATGCTAGCCCCAGCACAAGAATACTTGACTCTGAGATCACTTEST: gi|161707688|gb|FC056917.1|FC056917
genomic: TTCTCATTTCTGGAGCAAAACCTATATTGAACTTCATGGGAGTCCATTCTgtaagtagta ... tttcatatagGATTCCCCTATGCTAGCCCCAGCACAAGAATACTTGACTCTGAGATCACTT
EST: TTCTCATTTCTGGAGCAAAACCTATATTGAACTTCATGGGAGTCCATTCT GACTCCCCTATGCTAGCCCCAGCACAAGAATACTTGACTCTGAGATCACTTEST: gi|30301245|gb|CB978039.1|CB978039
genomic: TTCTCATTTCTGGAGCAAAACCTATATTGAACTTCATGGGAGTCCATTCTgtaagtagta ... tttcatatagGATTCCCCTATGCTAGCCCCAGCACAAGAATACTTGACTCTGAGATCACTT
EST: TTCTCATTTCTGGAGCAAAACCTATATTGAACTTCATGGGAGTCCATTCT GATTCCCCTATGCTAGCCCCAGCACAAGAATACTTGACTCTGAGATCACTT
genomic: TTCTCATTTCTGGAGCAAAACCTATATTGAACTTCATGGGAGTCCATTCTgtaagtagta ... tttcatatagGATTCCCCTATGCTAGCCCCAGCACAAGAATACTTGACTCTGAGATCACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAGCTGCACTGGTTGTTGGTGGTATCCTTGGCCTCATCCAAGCCATATTTCTCATTTCTGGAGCAAAACCTATATTGAACTTCATGGGAGTCCATTCTgtaagtagtaccttagttatggaaacaagaaaaacctcttcaaatttactttttttcgtctcatttagtccctagatttgtaacccatgattcagtgaagggctgttttttttcatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA