Sequence
atgc intronic sequence ATGC exonic sequenceGGAGATCAGAAACATTTGGTGTTGGCTCACCTTTTTGACAAACCGTGCTTCCTAGGTTTGCTTGCAGTACAGgtaattttacttttcatttctgtttatggcatgtgggtgtgttttcattacttttcatttcttccttttgggaatcaagatgtattatgatgtgtactgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os06g41020.1 (Oryza sativa), 5'ss of exon 4
GGAGATCAGAAACATTTGGTGTTGGCTCACCTTTTTGACAAACCGTGCTTCCTAGGTTTGCTTGCAGTACAGgt-----aattttacttttc--atttctgtttatg-------gcatgtgggtgtgttttca---------ttacttttcatttcttccttttgggaatcaagatgtattatgatgtgtactgt----------------
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AAAGACCAGAGGCATTTGGTGCTGGCTCATCTTTTCGACAAGCCTTGCTTTCTAGGATTGCTTGCAGTTCAGgtctgaagatcttaattcccctatggcactctatgttctcctacatgctattcactttgtaattagtaatttattgtacaactaatccagctagaactcgtaatctgacagaatataactcgtaatctttgatgttcag
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G05980.1 (Glycine max), 5'ss of exon 4
GGAGATCAGAAACATTTGGTGTTGGCTCACCTTTTTGACAAACCGTGCTTCCTAGGTTTGCTTGCAGTACAGgtaattttacttttcatttctgtttatggcatgtgggtgtgttttcat--tacttttcatttcttccttttgggaa-tcaagatgtattatgatgtgtactgt
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GGAGATTCTAAGCACCTAGTGTTGGCTCACCTTTTTGACAAGCCATGCTTTTTAGGGTTGCTTGCAGTGCAGgtaacgataatagta--ttctatatgatgattgttattttgtccacatagtactatacagtcttggctgtaagattctctagatgtttca-gttgtctttcaa
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G14020.1 (Glycine max), 5'ss of exon 4
GGAGATCAGAAACATTTGGTGTTGGCTCACCTTTTTGACAAACCGTGCTTCCTAGGTTTGCTTGCAGTACAGgtaattttacttttcatttctgtttatggcatgtgggtgtgttttcattacttttcatttcttccttttgggaatcaagatgtattatgatgtgtactgt----
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GGAGATTCTAAGCACCTAGTGTTGGCTCACCTTTTTGACAAGCCATGCTTTTTAGGGTTGCTTGCAATGCAGgtaatgataa----cagtattctatatgacataattgtgatttagtcctcaagtccgcatagtactatacagtcatgacctctgtaaaagtgcatacagtatat
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G14000.1 (Glycine max), 5'ss of exon 5
GGAGATCAGAAACATTTGGTGTTGGCTCACCTTTTTGACAAACCGTGCTTCCTAGGTTTGCTTGCAGTACAGgtaattttacttttcatttctgtttatggcatgtgggtgtgttttcat--tacttttcatttcttccttttgggaatcaagatgtattatgatgtgtactgt
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GGAGATTCTAAGCATCTATTGTTGGCTCACCTTTTTGATAAGCCATGCTTTTTAGGGTTGCTTGCAGTGCAGgtaatgataactgtaatctatatgacaagattgctgtttagtccttatagtattatatagttgtgtctgtaagtttctagactagaggttgcagttgtct--
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G03770.1 (Glycine max), 5'ss of exon 4
GGAGATCAGAAACATTTGGTGTTGGCTCACCTTTTTGACAAACCGTGCTTCCTAGGTTTGCTTGCAGTACAGgtaattttacttttcatttctgtttatggcat-gtgggtgtgttttcattacttttcatttcttccttttgggaatcaagatgtattatgatgtgtactgt-
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GGAGATCCCAGGCATCTATTGTTAGCTCACCTTTTTGACAAGCCATGCTTTCTAGGGTTGCTCGCAGTGAAGgtagtgataatatttattcattatgacagaattgctaccaagttcttattggcacaaattttgttgtgc--agtttcaagaggttgcaatatttacatcatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721828|gb|FC070507.1|FC070507EST: TGGCTCACCTTTTTGACAAACCATGCTTCCTAGGTTTGCTTGCAGTACAG GCTGATAGCATATCTGGTTTTCATGCCAATACACATATCCCAGTTGTTATT
genomic: TGGCTCACCTTTTTGACAAACCGTGCTTCCTAGGTTTGCTTGCAGTACAGgtaattttac ... ttgcttgtagGCTGATAGCATATCTGGTTTTCATGCCAATACACATATCCCAGTTGTTATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGATCAGAAACATTTGGTGTTGGCTCACCTTTTTGACAAACCGTGCTTCCTAGGTTTGCTTGCAGTACAGgtaattttacttttcatttctgtttatggcatgtgggtgtgttttcattacttttcatttcttccttttgggaatcaagatgtattatgatgtgtactgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatcaa