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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTGAACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGTgtaagatgttagacttaggtttctgtcaaatttaaatgggaataaacaaaaagtgggctcttctgatggaatgtttaatgttttag

Basic information

species Vitis vinifera
transcript Vv06s0004g01310.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os08g23810.2 (Oryza sativa), 5'ss of exon 4
GCATTGAACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGTgtaagatgttagacttaggtttctgtcaaatttaaatgggaataaacaaaaagtgggctct---tctgatggaa-tgtttaatgttttag
||| | ||||| ||||| || |||||| ||||||| |||||||||||||||||   ||  | | ||| | ||   ||| | |    ||||  | |   |   |  ||| |    | |   ||| ||  || | | |  || |  ||
GCACTAAACATATTTGAGACAAGCCTAAGGCGTGGAAAGTTTGATGAATCACGAAAgtttg-tattatatttctatttttcttgt-tttatctagctttgctctgaaaataacatttaactcttatctaactatctcttgatacag

upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 4
GCATTGAACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGTgtaagatgttagacttaggtttctgtcaaatttaaatgggaataaacaaaaagtgggctcttctgatggaatgtttaatgttttag
||  |||| ||||||||  |||||||||||||||| |||||||| |||||||||||||| || |||| |       |  |    | |||   ||    || || |   |  |    | || ||   |   |  || ||  ||
GCTCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACGAATCACGCGTgtatgacgttaaat----actgttactgattttgtttgt---tagactatgtgatgctattgctaataagaaactatattttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351029554|gb|FQ427394.1|FQ427394
EST:     AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGT                         GTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGC
genomic: AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGTgtaagatgtt ... aatgttttagGTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGC
EST: gi|349827600|gb|FQ422468.1|FQ422468
EST:     AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGT                         GTTGCCAGATGGTTCTTTGATGGAGATCACCCAAATATA
genomic: AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGTgtaagatgtt ... aatgttttagGTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATA
EST: gi|349828693|gb|FQ418428.1|FQ418428
EST:     AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGT                         GTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCCTTTGGATG
genomic: AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGTgtaagatgtt ... aatgttttagGTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCC-TTTGGATG
EST: gi|351043798|gb|FQ431350.1|FQ431350
EST:     AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGT                         GTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGC
genomic: AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGTgtaagatgtt ... aatgttttagGTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGC