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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAACAAGTTTGGGTTATGAATGTTGTTCCTTTTGATGCACAAAACAACACTCTTGGGATTGTCTATGAGCGTGGCCTCATTGGAACTTACATGAACTGgtaagacttgtaacatgtattcttgtagtttacaaagaaccgtgcaatactttgacctattaaagtacctttgtggctgttgctgtcaatttatgaattaaatcgagtttggaaatgatttatgccttcttctatttgtttttaagggtgaaaatattgagagtacatcaatacttgcttgcag

Basic information

species Vitis vinifera
transcript Vv05s0124g00530.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0124g00530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G47710.1 (Glycine max), 5'ss of exon 4
AGCAACAAGTTTGGGTTATGAATGTTGTTCCTTTTGATGCACAAAACAACACTCTTGGGATTGTCTATGAGCGTGGCCTCATTGGAACTTACATGAACTGgtaagacttgtaacatgtattcttgtagtttacaaagaaccgtgcaatactttgacctattaaagtacctttgtggctgttgctgtcaatttatgaattaaatcgagtttggaaatgatttatgccttcttctatttgtttttaagggtgaaaatattgagagtacatcaatacttgcttgcag
|  | |  ||||||||||||||||||||||| ||||||||| ||| ||||| |||||| ||| |||| || || ||||| || |||||||||||| | ||||| | |    |  || | | |||     ||  ||| |    |   |||||  |     ||| |     ||||  | ||    |  || |  | || || |   |                                                                               
AATATCCTGTTTGGGTTATGAATGTTGTTCCCTTTGATGCAAAAAGCAACAATCTTGGCATTATCTACGAACGAGGCCTTATAGGAACTTACATGGATTGgtatg-cacaaattatctttactttctactttaaaatatttattgtatact--ggttagttacaaggt-tttgaagatgagtttagca-taaaagatttcagctg-------------------------------------------------------------------------------

upper sequence: Vv05s0124g00530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G53780.1 (Glycine max), 5'ss of exon 4
AGCAACAAGTTTGGGTTATGAATGTTGTTCCTTTTGATGCACAAAACAACACTCTTGGGATTGTCTATGAGCGTGGCCTCATTGGAACTTACATGAACTGgtaagacttgtaacatgtattcttgtagtttacaaagaaccgtgcaatactttgacctattaaagtacctttgtggctgttgctgtcaatttatgaattaaatcgagtttggaaatgatttatgccttcttctatttgtttttaagggtgaaaatattgagagtacatcaatacttgcttgcag
|  | |  ||||||||||||||||||||||| ||||||| | ||| ||||| |||||| ||| |||| || || ||||| || |||||||||||| | |||||     || || |  |||| |  |  ||| |      |  |  |||| |||  | |||    ||   ||    | | |||  |   | ||  | || |||  || ||  |                                                                        
AATATCCTGTTTGGGTTATGAATGTTGTTCCCTTTGATGTAAAAAGCAACAATCTTGGCATTATCTACGAACGAGGCCTTATAGGAACTTACATGGATTGgta-----tgcaaaacttattatctttattttctt----ctttaaaata-tttatcgtatactggttagttacaaggttttgaagatgagtttagcataaaa--gatttcag------------------------------------------------------------------------

upper sequence: Vv05s0124g00530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G43200.1 (Arabidopsis thaliana), 5'ss of exon 4
AGCAACAAGTTTGGGTTATGAATGTTGTTCCTTTTGATGCACAAAACAACACTCTTGGGATTGTCTATGAGCGTGGCCTCATTGGAACTTACATGAACTGgtaagacttgtaacatgtattcttgtagtttacaaagaaccgtgcaatactttgacctattaaagtacctttgtggctgttgctgtcaatttatgaattaaatcgagtttggaaatgatttatgccttcttctatttgtttttaagggtgaaaatattgagagtacatcaatacttgcttgcag
|  | | | | |||||||||||||| ||||| ||||||    ||   ||||| || ||  |||| ||||| || || |||||||||||||||||||||||||||  |    || | ||  |||  ||   |  ||     | |    ||   |  | ||||        ||||| |                                                                                                            
AATATCCAATGTGGGTTATGAATGTGGTTCCATTTGATCTTAAACCGAACACACTCGGTGTTGTGTATGATCGCGGTCTCATTGGAACTTACATGAACTGgtaaatcactcaaaacgt-ctctgatatcatctaatttgacatctctta---taccatattttccggtttttgtag------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352764734|gb|FQ471794.1|FQ471794
EST:     ACTCTTGGGATTGTCTATGAGCGTGGCCTCATTGGAACTTACATGAACTG                         GTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCA
genomic: ACTCTTGGGATTGTCTATGAGCGTGGCCTCATTGGAACTTACATGAACTGgtaagacttg ... ttgcttgcagGTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCA