Sequence
atgc intronic sequence ATGC exonic sequenceTTTAAGTCAGTTAGTACGTTGGTTGGGAGGGAAAGCTGAAGAATTAGGAGTAGAAATATATCCAGGCTTTGCCGCTAGTGAGgtatcatgtgttttctcaatatatctagttgagattttgattttgtttttgccctaaataggcatatctagctgagaactatatctatcaaaaaggcaaaatatatatatacatatctgagaattatggactttgtgcatttacaatttccaatactggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0102g01110.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os10g37210.1 (Oryza sativa), 5'ss of exon 4
TTTAAGTCAGTTAGTACGTTGGTTGGGAGGGAAAGCTGAAGAATTAGGAGTAGAAATATATCCAGGCTTTGCCGCTAGTGAGgtatcatgtgttttctcaatatatctagttgagattttgattttgtttttgccctaaataggcatatctagctgagaactatatctatcaaaaaggcaaaatatatatatacatatctgagaattatggactttgtgcatttacaatttccaatactggcag
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CTTGAGCCAAATGGTGCGATGGATGGCCTCCAAAGCTGAAGAATTGGGTGTTGAAGTATATCCAGGTTTTGCTGCGAGTGAGgtaccaccatttttc-----------agttgtggaactc-ttctgtcaaagggctaat---attaatctgtctgaattct-tctctaacag-----------------------------------------------------------------------
upper sequence: Vv05s0102g01110.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G032222_T03 (Zea mays), 5'ss of exon 4
TTTAAGTCAGTTAGTACGTTGGTTGGGAGGGAAAGCTGAAGAATTAGGAGTAGAAATATATCCAGGCTTTGCCGCTAGTGAGgtatcatgtgttttctcaatatatctagttgagattttgattttgtttttgccctaaataggcatatctagctgagaactatatctatcaaaaaggcaaaatatatatatacatatctgagaattatggactttgtgcatttacaatttccaatactggcag
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CTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGTTGAAGTGTATCCAGGTTTTGCTGCTAGTGAGgtatcatcagtattcattttagaaacccttatgtggaaggactaatatct-ctctgaatt--cttctctaacagatactt-----tatgatgaaaatcaaatag----------------------------------------------------------
upper sequence: Vv05s0102g01110.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G032222_T01 (Zea mays), 5'ss of exon 4
TTTAAGTCAGTTAGTACGTTGGTTGGGAGGGAAAGCTGAAGAATTAGGAGTAGAAATATATCCAGGCTTTGCCGCTAGTGAGgtatcatgtgttttctcaatatatctagttgagattttgattttgtttttgccctaaataggcatatctagctgagaactatatctatcaaaaaggcaaaatatatatatacatatctgagaattatggactttgtgcatttacaatttccaatactggcag
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CTTGAGCCAATTGGTGCGTTGGATGGCCACAAAAGCTGAAGAGTTGGGTGTTGAAGTGTATCCAGGTTTTGCTGCTAGTGAGgtatcatcagtattcattttagaaacccttatgtggaaggactaatatct-ctctgaatt--cttctctaacag----------------------------------------------------------------------------------------
upper sequence: Vv05s0102g01110.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G03360.1 (Glycine max), 5'ss of exon 4
TTTAAGTCAGTTAGTACGTTGGTTGGGAGGGAAAGCTGAAGAATTAGGAGTAGAAATATATCCAGGCTTTGCCGCTAGTGAGgtatcatgtgttttctcaatatatctagttgagattttgattttgtttttgccctaaataggcatatctagctgagaactatatctatcaaaaaggcaaaatatatatatacatatctgagaattatggactttgtgcatttacaatttccaatactggcag
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TCTAAGTCAGTTAGTACGTTGGTTGGGAGCAAAAGCTGAAGAGCTAGGAGTGGAAATATACCCAGGATTTGCTGCGAGTGAGgtatttctgcttttgcttggatgtttcttc-----ttcacatttgttgctgtt-tacattggtatttttgcctggccag-----------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294967007|gb|GW839882.1|GW839882EST: AAGCTGAAGAATTAGGAGTAGAAATATATCCAGGCTTTGCCGCTAGTGAG ATATTATATGATGCAAACCACAATGTTATCGGCATTGGAACTAATGATATG
genomic: AAGCTGAAGAATTAGGAGTAGAAATATATCCAGGCTTTGCCGCTAGTGAGgtatcatgtg ... atactggcagATATTATATGATGCAAACCACAATGTTATCGGCATTGGAACTAATGATATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTAAGTCAGTTAGTACGTTGGTTGGGAGGGAAAGCTGAAGAATTAGGAGTAGAAATATATCCAGGCTTTGCCGCTAGTGAGgtatcatgtgttttctcaatatatctagttgagattttgattttgtttttgccctaaataggcatatctagctgagaactatatctatcaaaaaggcaaaatatatatatacatatctgagaattatggactttgtgcatttacaatttccaatactggcag
- - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - TGAAGA