1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTCAAGAATTTTCTTAAAGACAAAAGCACCCTGAAATCCAAGCCAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGGgtaagtcttgcaaacttgctatctttttgtgtttatagtgtggcctcaaaattcctactttatcaaacaatggaaaaatccaaggctccaagccatacaa...
species | Vitis vinifera |
transcript | Vv05s0094g01630.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGG GTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCTTACAEST: gi|110372081|gb|EC936226.1|EC936226
genomic: CAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGGgtaagtcttg ... tattgtacagGTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCATACA
EST: CAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGG GTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCATACAEST: gi|71869640|gb|DT018695.1|DT018695
genomic: CAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGGgtaagtcttg ... tattgtacagGTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCATACA
EST: CAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGG GTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCATACA
genomic: CAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGGgtaagtcttg ... tattgtacagGTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCATACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAGAATTTTCTTAAAGACAAAAGCACCCTGAAATCCAAGCCAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGGgtaagtcttgcaaacttgctatctttttgtgtttatagtgtggcctcaaaattcctactttatcaaacaatggaaaaatccaaggctccaagccatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaat