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ATCATGTGGTTAGTGAACATTTTCAGAGCGAAAATTGTGGATATCTCAGAGCATTCAGTAACCATTGAGgtgatagccaatctctgctggccttttcttttaaattttagctgggggattttaactcttaacaggcgttgttgtcaagttgtgtaaaccagttatgttg...
species | Vitis vinifera |
transcript | Vv05s0094g01110.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTCAGAGTGAAAGA-TGTGGATATCTCAGAGCATTCAGTAACCATTGAG GTAACTGGAGATCCAGGGAAGATGGTTGCTGTGCAGAGAAATTTAAGCAAGEST: gi|32247510|gb|CD713329.1|CD713329
genomic: TTTCAGAGCGAAA-ATTGTGGATATCTCAGAGCATTCAGTAACCATTGAGgtgatagcca ... ggtgatccagGTAACTGGAGATCCAGGGAAGATGGTTGCTGTGCAGAGAAATTTAAGCAAG
EST: TTTTCAGAGCGAAA-TTGTGGATATCTCAGAGCATTCAGTAACCATTGAG GTAACTGGAGATCCAGGGAEST: gi|352772784|gb|FQ473822.1|FQ473822
genomic: TTTTCAGAGCGAAAATTGTGGATATCTCAGAGCATTCAGTAACCATTGAGgtgatagcca ... ggtgatccagGTAACTGGAGATCCAGGGA
EST: TTTTCAGAGCGAAAATTGTGGATATCTCAGAGCATTCAGTAACCATTGAG GTAACTGGAGATCCAGGGAAGATGGTTGCTGTGCAGAGAAATTTAAGCAAGEST: gi|110708435|gb|EE085972.1|EE085972
genomic: TTTTCAGAGCGAAAATTGTGGATATCTCAGAGCATTCAGTAACCATTGAGgtgatagcca ... ggtgatccagGTAACTGGAGATCCAGGGAAGATGGTTGCTGTGCAGAGAAATTTAAGCAAG
EST: TTTTCAGAGCGAAAATTGTGGATATCTCAGAGCATTCAGTAACCATTGAG GTAACTGGAGATCCAGGGAAGATGGTTGCTGTGCAGAGAAATTTAAGCAAGEST: gi|110690986|gb|EE068568.1|EE068568
genomic: TTTTCAGAGCGAAAATTGTGGATATCTCAGAGCATTCAGTAACCATTGAGgtgatagcca ... ggtgatccagGTAACTGGAGATCCAGGGAAGATGGTTGCTGTGCAGAGAAATTTAAGCAAG
EST: CTCAGAGCATTCAGTAACCATTGAG GTAACTGGAGATCCAGGGAAGATGGTTGCTGTGCAGAGAAATTTAAGCAAGEST: gi|110723613|gb|EE101123.1|EE101123
genomic: CTCAGAGCATTCAGTAACCATTGAGgtgatagcca ... ggtgatccagGTAACTGGAGATCCAGGGAAGATGGTTGCTGTGCAGAGAAATTTAAGCAAG
EST: TTTTCAGAGCGAAAATTGTGGATATCTCAGAGCATTCAGTAACCATTGAG GTAACTGGAGATCCAGGGAAGATGGTTGCTGTGCAGAGAAATTTAAGCAAG
genomic: TTTTCAGAGCGAAAATTGTGGATATCTCAGAGCATTCAGTAACCATTGAGgtgatagcca ... ggtgatccagGTAACTGGAGATCCAGGGAAGATGGTTGCTGTGCAGAGAAATTTAAGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCATGTGGTTAGTGAACATTTTCAGAGCGAAAATTGTGGATATCTCAGAGCATTCAGTAACCATTGAGgtgatagccaatctctgctggccttttcttttaaattttagctgggggattttaactcttaacaggcgttgttgtcaagttgtgtaaaccagttatgttg
- - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggat