Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCAACAGGCTTCAGCTTTACGTGTGACTTGAGTGATAATATTGCAGCTCCATGGCCTTCATCGACCTCAATTTCGTCCTTGTCTCTTTGTGCTCCGGgtaactgattgacaaagaatcatttttgttcatttcctcatttgttgttatattagatcaaataaacttatggtttttatctttgaagtgctatcattacaagtttgtttcaatgtacatttcttactgatcacttatcaaaatttgcag

Basic information

species Vitis vinifera
transcript Vv05s0094g00050.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0094g00050.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G162251_T02 (Zea mays), 5'ss of exon 5
AATTCAACAGGCTTCAGCTTTACGTGTGACTTGAGTGATAATATTGCAGCTCCATGGCCTTCATCGACCTCAATTTCGTCCTTGTCTCTTTGTGCTCCGGgtaactgattgacaaagaatc-atttttgttcatttcctca-tttgttgttatattagatcaaataaacttatggtttttatctttgaagtgctatcattacaagtttgtttcaatgtacatttcttactgatcacttatcaaaatttgcag
||  | |||||| | |||||||| || || |||||||| ||||||||||| |||||||| || ||  | ||  |    || ||||| ||||||||||| |||||  |     ||   | || | ||| | |||      || |    |   || || ||   || ||  | ||  |   ||| ||| |  || |   | ||| ||||| | || |   |||||        |||   | |   | |  |   
AACGCTACAGGCATTAGCTTTACATGCGATTTGAGTGACAATATTGCAGCACCATGGCCATCCTCATCTTCTGTCCAATCATTGTCACTTTGTGCTCCAGgtaagag-----caggcattctaatttgggtcacaaaaacaatacactacaattttcgaaataacaacatgattctcactatttttaacatgttg--agtactagtttttgtctaatcacattggc-----atcctcttttggattcag---

upper sequence: Vv05s0094g00050.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G01200.1 (Glycine max), 5'ss of exon 6
AATTCAACAGGCTTCAGCTTTACGTGTGACTTGAGTGATAATATTGCAGCTCCATGGCCTTC---ATCGACCTCAATTTCGTCCTTGTCTCTTTGTGCTCCGGgtaactgattgacaaagaatcatttttgttcatttcctcatttgttgttatattagatcaaataaacttatggtttttatctttgaagtgctatcattacaagtttgtttcaatgtacatttcttactgatcacttatcaaaatttgcag
   ||| ||||||| |||||||| ||||| ||||||||||| ||||| || || ||||||||   |||  | ||| || | ||  |||| || ||||| || ||||  || |||   ||   |  ||| | || ||  |  | |   || |||  |  |      |    ||||| |  |    | |   ||       |       |||| || || |   ||| || | |                     
---TCATCAGGCTTTAGCTTTACATGTGATTTGAGTGATAACATTGCTGCACCCTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgtttggacaaagttggtttctcttgatcgctgcttacttttttaattccggatgt-tggtattatgatagtacaatatactgtttgcatttgcttgacttgtctctattttt-ttttttgcag---------------------

upper sequence: Vv05s0094g00050.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G36130.1 (Glycine max), 5'ss of exon 5
AATTCAACAGGCTTCAGCTTTACGTGTGACTTGAGTGATAATATTGCAGCTCCATGGCCTTC---ATCGACCTCAATTTCGTCCTTGTCTCTTTGTGCTCCGGgtaactgattgacaaagaatcatttttgttcatttcctcatttgttgttatattagatcaaataaacttatggtttttatctttgaagtgctatcattacaagtttg-tttcaatgtacatttcttactgatcacttatcaaaatttgcag
   ||| ||||||| |||||||| ||||| ||||||||||| ||||| || || ||||||||   |||  | ||| || | ||  |||| || ||||| || ||||  || |||  | | | |   |||   |   |  ||  ||  || || ||||        |    ||||| | ||        || | || |    | | | ||   |    | |  |||| ||  | |                    
---TCATCAGGCTTTAGCTTTACATGTGATTTGAGTGATAACATTGCTGCGCCCTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgtttgg-acaaatttgctttctcttgatcgctgcttactttttttattcaggatgttggtattatgatatta-----caaaatactgtttgcatatgcttaactcttgtctctatttttttttcag-------------------

upper sequence: Vv05s0094g00050.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G30700.1 (Arabidopsis thaliana), 5'ss of exon 6
AATTCAACAGGCTTCAGCTTTACGTGTGACTTGAGTGATAATATTGCAGCTCCATGGCCTTCATCGACCTCAATTTCGTCCTTGTCTCTTTGTGCTCCGGgtaactgattgacaaagaatcatttttgttcatttcctcatttgttgttatattagatcaaataaacttatggtttttatctttgaagtgctatcattacaagtttgtttcaatgtacatttcttactgatcacttatcaaaatttgcag
||  || |||||| ||||||||| ||||| ||||  || || ||||| ||||||||||| || ||  | ||||| || || |||||||| |||||||| |||||    ||  |         |   ||||| | | || | |  |||||  |     || |  ||||| |    ||| |  |   ||           | |  |||| || |         ||||| | |    |  |  |||| |||||
AACACATCAGGCTACAGCTTTACATGTGATTTGACAGACAACATTGCTGCTCCATGGCCATCTTCATCGTCAATGTCTTCTTTGTCTCTATGTGCTCCTGgtaatcacttctct-----ctctacctgttc-tcttcttactcattgttggagct--tccagaaaactaaaaagtttaaattgcaaaa----------aaagttttgcttta---------tcttattcaattttattttaaatatgcag