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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTGTTCCAAAAAAAATTCTGGAGTTGATGAATGTTCCTGGGCTTACTAGAGAAAATGTTGCCAGTCACCTTCAGgtagaaaattcttacgatcttgattagggaagagatctatggttctaattttgtttctgttatgaagactaatgaatgtggccacttcggtgcag

Basic information

species Vitis vinifera
transcript Vv05s0077g01480.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g01480.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G37220.1 (Glycine max), 5'ss of exon 4
AGGCTGTTCCAAAAAAAATTCTGGAGTTGATGAATGTTCCTGGGCTTACTAGAGAAAATGTTGCCAGTCACCTTCAGgtagaaaattctta--cgatcttgattagggaagagatctatg----gttctaattt----tgtttctgttatgaagactaatgaatgtggccacttcggtgcag--------------------------------
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||  | | | |||  | || |  | |  || |  ||  |  |     || ||||      | ||  | || |||  |   |||  | ||   ||||    | ||                                
AGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGgtatcatactgttatcctatatatactttgggaaggacttgggttaaattttaatccctaattttcttcttgtgatcatctatgc-tatgattacttgaaggaagtaactctttttcttcatcctgttttattacag

upper sequence: Vv05s0077g01480.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G03380.1 (Glycine max), 5'ss of exon 4
AGGCTGTTCCAAAAAAAATTCTGGAGTTGATGAATGTTCCTGGGCTTACTAGAGAAAATGTTGCCAGTCACCTTCAGgtagaaaattcttacgatct---tgattagggaagagatctatggttctaattttgtttctg---------ttatgaagactaatgaatgtggccacttcggtgcag--------------------------------
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||  | ||| | |   | |   |  || ||||||   |  |  |||  | |||| |  ||          || |||  |   |||  | ||   ||||    | ||                                
AGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGgtatgatattgtaatcctatatgtactttgggaaggatttgagagttaaatttttatccctaattttcttcttgtgatcatctatgc-tatgattacttgaaggaagtaactctttttcctaatcctgttttgttacag