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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGAGTTATAACCGAACGCTGCTATGGCTGTGGCCGGTGCTTTCCTGTTTGCCCATTTGACAAAATAAgtgagttgtgttcacttctgttctgctattttcttcacttctcctttcttattcccttcttctgtctaaggtgcacgtggctacattgaattcatatattttcctgctgttgttgcttttggaatgggttggataatatctggttgaattgatatag

Basic information

species Vitis vinifera
transcript Vv05s0077g00960.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00960.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G864166_T01 (Zea mays), 5'ss of exon 5
GGTGGAGTTATAACCGAACGCTGCTATGGCTGTGGCCGGTGCTTTCCTGTTTGCCCATTTGACAAAATAAgtgagttgtgt---tcacttctgttctgctattttcttcacttctcctttcttattcccttcttctgtctaa-ggtgcacgtggctacattgaattcatatattttcctgctgttgttgcttttggaatgggttggataatatctggttgaattgatatag
||||| || || || || || |||||||| ||||| |||||||| || |||||||| | ||||| |||||||||||  |||   ||  || ||||| | | || ||||    ||  | |    ||      ||      ||      || ||     | |||| | || |                                                             
GGTGGTGTAATTACTGAGCGGTGCTATGGATGTGGTCGGTGCTTGCCAGTTTGCCCGTATGACAGAATAAgtgagtgctgtacttcttttttgttccgttcttgtctttttgtcatcatctgaatagttcactcggagttagtaagacaagtaatacctttgattgcaca-------------------------------------------------------------