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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAAAGGTTATTATGAATATGCTAAATTAAAAGGAGTTGATGTTGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAGgtttagtttcctatcattttcatgtataaggacaatgtcactgttattttggggtaactctcttccttatagtatgaagtttgagtcacattattttcctacag

Basic information

species Vitis vinifera
transcript Vv05s0077g00690.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G36610.1 (Glycine max), 5'ss of exon 4
GTACAAAGGTTATTATGAATATGCTAAATTAAAAGGAGTTGATGTTGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAGgt-------ttagtttcctatcattttcatgt--ataaggacaatgtcactgttattttggggtaactctcttccttatagtatgaagtttg--agtcac-attattttcctacag----------------------------------------------------
|||||||||||   |||| ||||| ||||| |||||||| ||||||||   ||| ||||||||||| || ||| ||||||| || || || ||||||       |||||||   || |   |  ||    |||||||| ||| | | |   | |  | |||   |  || |||||   |||  | |   ||  |  |  ||||  |    |                                                    
GTACAAAGGTTTCCATGACTATGCAAAATTGAAAGGAGTGGATGTTGGCAAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGgtgtgttcattagttttgaattagaatggtgctgctaaggaca-tgtaaatttacctctaagttaatgttgatcattatatcttgatctctattagagatgacaatttgtccgttgatggcaataaattaaaaggaaaaagagcaataatttatttatttctttacag

upper sequence: Vv05s0077g00690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G03990.1 (Glycine max), 5'ss of exon 4
GTACAAAGGTTATTATGAATATGCTAAATTAAAAGGAGTTGATGTTGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAGgt-------ttagtttcctatcattttcatgtataaggacaatgtcactgttattttggggtaactctcttccttata----gtatgaagtttgag-tcacattattttcctacag-------------------------------------------
|||||||||||   |||| ||||| || || ||||||||  ||||||||| ||| ||||||||||| || ||| ||||||| || || || ||||||       ||||||   ||  | | |  ||  |||||||| ||  | | |   | |  | |||   |  || |||||    ||      || ||| | ||| | | | | |  |                                            
GTACAAAGGTTTCCATGACTATGCAAAGTTGAAAGGAGTGAATGTTGGTGAACCTGTTGGACTTGAAGTTCTTGTTGATGGAACAGTGCCGACAGgtgtgttcattagttcattagaaatgtgctgc-taaggaca-tgcaaatttacctctaagttaatgttgatcattatatctggttctctattagagatgacaatttgtccgttgatggcaatagattaaaaggaaaagagcaatattttttttttgcag

upper sequence: Vv05s0077g00690.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G06580.1 (Arabidopsis thaliana), 5'ss of exon 4
GTACAAAGGTTATTATGAATATGCTAAATTAAAAGGAGTTGATGTTGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAGgtttagtttcctatcattttcatgtataaggacaa--tgtcactgttattttggggtaactctcttccttatagtatgaagtttgagtcacattattttcctacag
||||||||| | | |||| ||||| || | |||||| ||  || |||||  |||||||||||||||||| ||| ||||||| |  |||||||||||| || |     || ||  | | | |  || | ||  | ||| | | |  |   | | |     || |||  |   || |  | ||||  |   |||||       
GTACAAAGGATTTCATGAGTATGCAAAGTCAAAAGGTGTGAATCTTGGTTCACCAGTTGGACTTGATGTGCTTGTTGATGGAATTGTTCCTACAGgtata-tgcatcatgatacttacggaacagaaaaacttatcatt-tcaaataaagtttatcagtttactttcaagctgtaactggagtgtctcgatttttag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720147|gb|EE095816.1|EE095816
EST:     TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACAGTTCCTACAG                         GATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTA
genomic: TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAGgtttagtttc ... tttcctacagGATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTA
EST: gi|110723631|gb|EE101165.1|EE101165
EST:     TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACAGTTCCTACAG                         GATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTA
genomic: TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAGgtttagtttc ... tttcctacagGATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTA
EST: gi|71863613|gb|DT012668.1|DT012668
EST:     TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAG                         GATCTGGACTATCAAGCTCT
genomic: TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAGgtttagtttc ... tttcctacagGATCTGGACTATCAAGCTCT
EST: gi|33405936|gb|CF211563.1|CF211563
EST:     TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAG                         GATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTA
genomic: TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAGgtttagtttc ... tttcctacagGATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTA
EST: gi|77581517|gb|DV219710.1|DV219710
EST:     TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACAGTTCCTACAG                         GATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTA
genomic: TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAGgtttagtttc ... tttcctacagGATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTA