Sequence
atgc intronic sequence ATGC exonic sequenceGACCGTGCATATGTTGACAAAACATTTAATGGTCAAAGTTGGTTTCGCTACAGAGAAAATGCACTGCGTAATGAACCAATGAACACACGAGAAGAGACATgtatggctaccatcccttgcagtcatttatctgtggctatttgcagttcatctctctaaattataggggaataatataaattactgtgtttgggcatgca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0077g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g57060.1 (Oryza sativa), 5'ss of exon 2
GACCGTGCATATGTTGACAAAACATTTAATGGTCAAAGTTGGTTTCGCTACAGAGAAAATGCACTGCGTAATGAACCAATGAACACACGAGAAGAGACATgtatggctaccatcccttgcagtcatttatctgtggctatttgcagttcatctctctaaattatagggga-ataatataaattactgtgtttgggcatgca-
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GATCGTGCATATTACGACAAATCTTTCAATGGGCAGAGTTGGTTTAGATACCGTGAAAATGCTCTCCGCAATGAACCAATGAATACACGGGAAGAAACATgtatgatttt--tttaatgcttttctttctctttcttggttaacattttctattgcccttcaataatctctgtgacaaaaattacttttatgtgccaagctg
upper sequence: Vv05s0077g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G379002_T01 (Zea mays), 5'ss of exon 3
GACCGTGCATATGTTGACAAAACATTTAATGGTCAAAGTTGGTTTCGCTACAGAGAAAATGCACTGCGTAATGAACCAATGAACACACGAGAAGAGACATgtatggctaccatcccttgcagtca-tttatctgtggctatttgcagttcatctctctaaattataggggaataatataaat-tactgtgtttgggcatgca
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GATCGAGCATACTATGACAAATCTTTTAATGGGCAAAGTTGGTTTAGATACCGTGAAAATGCCCTTCGCAATGAACCGATGAACACAAGGGAAGAGACATgtatgattcttgcatattgccccaactttgtctttcataactagaactagaaccttgcctttcatacatcacaatcacacttctatcacggtcaga-ataa-
upper sequence: Vv05s0077g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G34110.1 (Glycine max), 5'ss of exon 4
GACCGTGCATATGTTGACAAAACATTTAATGGTCAAAGTTGGTTTCGCTACAGAGAAAATGCACTGCGTAATGAACCAATGAACACACGAGAAGAGACATgtatggctaccatcccttgcagtcatttatctgtggctatttgcagttcatctctctaaattataggggaataatataaattactgtgtttg-ggcatgca-
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GACCGAGCGTACATTGATAAAAGTTTTAATGGACAGAGTTGGTTTAGGTATAGAGAAGATGCACTACGCAATGAACCAATGAACAATCGAGATGAGACATgtatagctttcattctcaactttt-tttatttgtttttctacttgctgcacaaagacaaaacatgctaagatggta-aattctctatgttttcaacatagaa
upper sequence: Vv05s0077g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G17740.1 (Arabidopsis thaliana), 5'ss of exon 3
GACCGTGCATATGTTGACAAAACATTTAATGGTCAAAGTTGGTTTCGCTACAGAGAAAATGCACTGCGTAATGAACCAATGAACACACGAGAAGAGACATgtatg-gctaccatcccttgcagtcatttatctgtggctatttgcagttcatctctctaaattataggggaataatataaattactgtgtttgggcatgca
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GATCGTGCTTATATTGATAAAACCTTTAATGGACAAAGCTGGTTTCGTTACAGAGAGACTGCTTTACGAAATGAGCCTATGAACACTCGAGAAGAGACATgtatgtgtgaatagctttattaaccttttacaaa-----attagtacaacttgcttctaaatt---------tggtgttggtt--tgtgtttag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71858675|gb|DT007730.1|DT007730EST: CAGAGAAAATGCACTGCGTAATGAACCAATGAACACACGAGAAGAGACAT ATATGGCAATAAAGAAGATGCTTGCCACACTTGATGATCCTTTCACTCGCT
genomic: CAGAGAAAATGCACTGCGTAATGAACCAATGAACACACGAGAAGAGACATgtatggctac ... ttgtatgcagATATCGCAATAAAGAAGATGCTTGCCACACTTGATGATCCTTTCACACGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACCGTGCATATGTTGACAAAACATTTAATGGTCAAAGTTGGTTTCGCTACAGAGAAAATGCACTGCGTAATGAACCAATGAACACACGAGAAGAGACATgtatggctaccatcccttgcagtcatttatctgtggctatttgcagttcatctctctaaattataggggaataatataaattactgtgtttgggcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaataa