1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggaggagatgccaacttgaaatttattctgatcaaatatttggtattgcatgtacacttgctcatttctcatcattgggattttgtag
species | Vitis vinifera |
transcript | Vv05s0062g00220.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNNNCAGAAAA GAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTAEST: gi|349816841|gb|FQ399709.1|FQ399709
genomic: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
EST: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNNNCAGAAAA GAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTAEST: gi|110412506|gb|EC978256.1|EC978256
genomic: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
EST: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNNNCAGAAAA GAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTAEST: gi|349819759|gb|FQ402696.1|FQ402696
genomic: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
EST: GATACTGCAGAGCCAAGACAAGAAAATATCGGCCAGNNNNNNNCAGAAAA GAAGACCTAGAGAATTCATTACTAAGTGCTTCCAAACAGCAGAACCGGTTAEST: gi|110708560|gb|EE086241.1|EE086241
genomic: GATACTGCAGAGCCAAGACAAGAAA-TATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
EST: ACTGCAGAGCCAA-A-AAGAAGAATATCGGGCCAGTTTTTGTT-AGAAAA GAAGAACTANAGAATTCATTACTAAEST: gi|110417406|gb|EC983458.1|EC983458
genomic: ACTGCAGAGCCAAGACAAGAA-A-TATCGG-CCAGTTTTT-TTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAA
EST: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNNNCAGAAAA GAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTAEST: gi|349830095|gb|FQ420355.1|FQ420355
genomic: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
EST: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNNNCAGAAAA GAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTAEST: gi|110687203|gb|EE064406.1|EE064406
genomic: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
EST: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNNNCAGAAAA GAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAEST: gi|161718396|gb|FC064783.1|FC064783
genomic: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCA
EST: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTT-CAGAAAA GAAGACCTAGAGAAT-CATTACTAAGTGCTTCCA-CCAG
genomic: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGGAGCTTGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggaggagatgccaacttgaaatttattctgatcaaatatttggtattgcatgtacacttgctcatttctcatcattgggattttgtag
- - - - - - - CTGCAG
- - - - - - - - - - - - - - - AAGAAA